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Protein Overview: SYP23_ARATH

General Information:
Name(s) found: SYP23_ARATH [Swiss-Prot]
Description(s) found:
Found 21 descriptions.
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  • Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 255 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: cellular membrane fusion [TAS]
    intracellular protein transport [TAS]
    Molecular Function: SNAP receptor activity [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQDLEAGR GRSLASSRNI NGGGSRQDTT QDVASGIFQI NTSVSTFHRL VNTLGTPKDT  60
   61 PELREKLHKT RLYIGQLVKD TSAKLKEASE TDHQRGVNQK KKIVDAKLAK DFQAVLKEFQ 120
  121 KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI 180
  181 AFNEAVIEER EQGIQEIQQQ IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK 240
  241 SHLVRHQRHK DQILL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..255] PSI-BLAST 24.221849 Syntaxin 1A N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phosphatidic acid binding
    		•  5.99692791841048 bayes_pls_golite062009
  • SNAP receptor activity
    		•  3.50393203740159 bayes_pls_golite062009
  • calcium channel inhibitor activity
    		•  2.5370773879611 bayes_pls_golite062009
  • binding
    		•  2.13344290488739 bayes_pls_golite062009
  • myosin head/neck binding
    		•  1.76421579737303 bayes_pls_golite062009
  • transporter activity
    		•  1.74189664015129 bayes_pls_golite062009
  • protein binding
    		•  1.51700626946713 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.49085442233849 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.13101548288086 bayes_pls_golite062009
  • protein transporter activity
    		•  1.0920578675702 bayes_pls_golite062009
  • extracellular ligand-gated ion channel activity
    		•  0.86350507004267 bayes_pls_golite062009
  • excitatory extracellular ligand-gated ion channel activity
    		•  0.86350507004267 bayes_pls_golite062009
  • SNARE binding
    		•  0.71459772253941 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.643064875848901 bayes_pls_golite062009
  • gated channel activity
    		•  0.621670335227137 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  0.41937155561589 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  0.41937155561589 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.370484918396857 bayes_pls_golite062009
  • arachidonic acid binding
    		•  0.187597126289389 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • channel activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.0435980899803177 bayes_pls_golite062009
  • phospholipid binding
    		•  0.0172309833091902 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle