| Protein: | SYP23_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 255 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYP23_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
172.0 | [0..6] | [243..904] |
|
Region A: Residues: [1-255] |
1 11 21 31 41 51
| | | | | |
1 MSFQDLEAGR GRSLASSRNI NGGGSRQDTT QDVASGIFQI NTSVSTFHRL VNTLGTPKDT 60
61 PELREKLHKT RLYIGQLVKD TSAKLKEASE TDHQRGVNQK KKIVDAKLAK DFQAVLKEFQ 120
121 KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI 180
181 AFNEAVIEER EQGIQEIQQQ IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK 240
241 SHLVRHQRHK DQILL
|
| Detection Method: |  |
| Confidence: | 24.221849 |
| Match: | 1dn1B |
| Description: | Syntaxin 1A N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| phosphatidic acid binding | 5.99692791841048 | bayes_pls_golite062009 |
| SNAP receptor activity | 3.50393203740159 | bayes_pls_golite062009 |
| calcium channel inhibitor activity | 2.5370773879611 | bayes_pls_golite062009 |
| binding | 2.13344290488739 | bayes_pls_golite062009 |
| myosin head/neck binding | 1.76421579737303 | bayes_pls_golite062009 |
| transporter activity | 1.74189664015129 | bayes_pls_golite062009 |
| protein binding | 1.51700626946713 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.49085442233849 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.13101548288086 | bayes_pls_golite062009 |
| protein transporter activity | 1.0920578675702 | bayes_pls_golite062009 |
| extracellular ligand-gated ion channel activity | 0.86350507004267 | bayes_pls_golite062009 |
| excitatory extracellular ligand-gated ion channel activity | 0.86350507004267 | bayes_pls_golite062009 |
| SNARE binding | 0.71459772253941 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.643064875848901 | bayes_pls_golite062009 |
| gated channel activity | 0.621670335227137 | bayes_pls_golite062009 |
| ligand-gated channel activity | 0.41937155561589 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 0.41937155561589 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.370484918396857 | bayes_pls_golite062009 |
| arachidonic acid binding | 0.187597126289389 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.0647076360772156 | bayes_pls_golite062009 |
| channel activity | 0.0647076360772156 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.0435980899803177 | bayes_pls_golite062009 |
| phospholipid binding | 0.0172309833091902 | bayes_pls_golite062009 |
