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Protein Overview: SODM1_ARATH

General Information:
Name(s) found: SODM1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6016702|gb|AAF01529.1|AC009991_25 putative [Mn] superoxide dismutase [Arabidopsis thaliana] [NCBI NR]
  • gi|21542455|sp|O81235.2|SODM_ARATH RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [NCBI NR]
  • gi|18377488|gb|AAL66910.1| putative Mn superoxide dismutase [Arabidopsis thaliana] [NCBI NR]
  • gi|16648875|gb|AAL24289.1| putative Mn superoxide dismutase [Arabidopsis thaliana] [NCBI NR]
  • gi|15228407|ref|NP_187703.1| MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide dismutase [Arabidopsis thaliana] [NCBI NR]
  • Superoxide dismutase [Mn], mitochondrial OS=Arabidopsis thaliana GN=SODA PE=1 SV=2 [Swiss-Prot]
  • Superoxide dismutase [Mn] 1, mitochondrial OS=Arabidopsis thaliana GN=MSD1 PE=1 SV=2 [Swiss-Prot]
  • (O81235) Superoxide dismutase [Mn], mitochondrial precursor (EC 1.15.1.1) [athaliana3702.FASTAC.txt]
  • putative [Mn] superoxide dismutase [Arabidopsis thaliana]gi|18377488|gb|AAL66910.1| putative Mn superoxide dismutase [Arabidopsis thaliana]gi|16648875|gb|AAL24289.1| putative Mn superoxide dismutase [Arabidopsis thaliana]gi|21542455|sp|O81235|SODM_ARAT [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Superoxide dismutase [Mn], mitochondrial precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: MEE33, MSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); manganese superoxide dismutase | chr3:3418020-3419586 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative Mn superoxide dismutase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); manganese superoxide dismutase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative [Mn] superoxide dismutase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Superoxide dismutase [Mn], mitochondrial precursor [nr-271106-contam.fasta]
  • | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 231 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA][NAS]
    Biological Process: response to zinc ion [IEP]
    response to salt stress [IEP]
    embryonic development ending in seed dormancy [IMP]
    removal of superoxide radicals [IC]
    defense response to bacterium [IEP]
    Molecular Function: copper ion binding [IDA]
    metal ion binding [IDA]
    superoxide dismutase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH  60
   61 QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH VNHSIFWKNL APSSEGGGEP 120
  121 PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT 180
  181 KGGSLVPLVG IDVWEHAYYL QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..231] PSI-BLAST 83.0 Mn superoxide dismutase (MnSOD)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • superoxide dismutase activity
    		•  7.08472506566271 bayes_pls_golite062009
  • oxidoreductase activity, acting on superoxide radicals as acceptor
    		•  7.08472506566271 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.73079314406851 bayes_pls_golite062009
  • protein binding
    		•  1.36581969443298 bayes_pls_golite062009
  • binding
    		•  1.30562201415299 bayes_pls_golite062009
  • antioxidant activity
    		•  0.766723962166325 bayes_pls_golite062009
  • cation binding
    		•  0.485672227923388 bayes_pls_golite062009
  • metal ion binding
    		•  0.485672227923388 bayes_pls_golite062009
  • ion binding
    		•  0.480092270451566 bayes_pls_golite062009
  • catalytic activity
    		•  0.390489225704392 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle