YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SODM1_ARATH
Organism: Arabidopsis thaliana
Length: 231 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SODM1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553457 - gi|21553457|gb|AAM62550.1| putative (Mn) superoxide dismutase [Arabidopsis thaliana]
340.0 [0..1] [231..1]

Back

Predicted Domain #1
Region A:
Residues: [1-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH  60
   61 QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH VNHSIFWKNL APSSEGGGEP 120
  121 PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT 180
  181 KGGSLVPLVG IDVWEHAYYL QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.0
Match: 1n0jA
Description: Mn superoxide dismutase (MnSOD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
superoxide dismutase activity 7.08472506566271 bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor 7.08472506566271 bayes_pls_golite062009
oxidoreductase activity 2.73079314406851 bayes_pls_golite062009
protein binding 1.36581969443298 bayes_pls_golite062009
binding 1.30562201415299 bayes_pls_golite062009
antioxidant activity 0.766723962166325 bayes_pls_golite062009
cation binding 0.485672227923388 bayes_pls_golite062009
metal ion binding 0.485672227923388 bayes_pls_golite062009
ion binding 0.480092270451566 bayes_pls_golite062009
catalytic activity 0.390489225704392 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle