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Protein Overview: SODF1_ARATH

General Information:
Name(s) found: SODF1_ARATH [Swiss-Prot]
Description(s) found:
Found 24 descriptions.
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  • Superoxide dismutase [Fe] 1, chloroplastic OS=Arabidopsis thaliana GN=FSD1 PE=1 SV=4 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 212 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA][NAS]
    mitochondrion [IDA]
    chloroplast envelope [IDA]
    plasma membrane [IDA]
    thylakoid [IDA]
    Biological Process: response to oxidative stress [IDA]
    removal of superoxide radicals [IC]
    response to copper ion [IEP]
    response to cadmium ion [IDA]
    circadian rhythm [IEP]
    Molecular Function: copper ion binding [IDA]
    superoxide dismutase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASSAVTAN YVLKPPPFAL DALEPHMSKQ TLEFHWGKHH RAYVDNLKKQ VLGTELEGKP  60
   61 LEHIIHSTYN NGDLLPAFNN AAQAWNHEFF WESMKPGGGG KPSGELLALL ERDFTSYEKF 120
  121 YEEFNAAAAT QFGAGWAWLA YSNEKLKVVK TPNAVNPLVL GSFPLLTIDV WEHAYYLDFQ 180
  181 NRRPDYIKTF MTNLVSWEAV SARLEAAKAA SA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..212] PSI-BLAST 69.39794 The crystal structure of the eukaryotic FeSOD from Vigna unguiculata suggests a new enzymatic mechanism

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • superoxide dismutase activity
    		•  7.08472506566271 bayes_pls_golite062009
  • oxidoreductase activity, acting on superoxide radicals as acceptor
    		•  7.08472506566271 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.73079314406851 bayes_pls_golite062009
  • protein binding
    		•  1.36581969443298 bayes_pls_golite062009
  • binding
    		•  1.30562201415299 bayes_pls_golite062009
  • antioxidant activity
    		•  0.766723962166325 bayes_pls_golite062009
  • cation binding
    		•  0.485672227923388 bayes_pls_golite062009
  • metal ion binding
    		•  0.485672227923388 bayes_pls_golite062009
  • ion binding
    		•  0.480092270451566 bayes_pls_golite062009
  • catalytic activity
    		•  0.390489225704392 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle