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Protein Overview: SCY1_ARATH

General Information:
Name(s) found: SCY1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|4185137|gb|AAD08940.1| putative preprotein translocase SECY protein [Arabidopsis thaliana] [NCBI NR]
  • gi|27363258|gb|AAO11548.1| At2g18710/MSF3.9 [Arabidopsis thaliana] [NCBI NR]
  • pir||F84567 probable preprotein translocase SECY protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|17473607|gb|AAL38269.1| putative preprotein translocase SECY protein [Arabidopsis thaliana] [NCBI NR]
  • gi|16604410|gb|AAL24211.1| At2g18710/MSF3.9 [Arabidopsis thaliana] [NCBI NR]
  • gi|15983352|gb|AAL11544.1|AF424550_1 At2g18710/MSF3.9 [Arabidopsis thaliana] [NCBI NR]
  • gi|15224214|ref|NP_179461.1| SCY1 (SecY Homolog 1); P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] [NCBI NR]
  • gi|12643748|sp|Q38885.2|SECY_ARATH RecName: Full=Preprotein translocase subunit secY, chloroplastic; AltName: Full=CpSecY; Flags: Precursor [NCBI NR]
  • Preprotein translocase subunit secY, chloroplastic OS=Arabidopsis thaliana GN=SECY PE=1 SV=2 [Swiss-Prot]
  • Preprotein translocase subunit SCY1, chloroplastic OS=Arabidopsis thaliana GN=SCY1 PE=1 SV=2 [Swiss-Prot]
  • (Q38885) Preprotein translocase secY subunit, chloroplast precursor (CpSecY) [athaliana3702.FASTAC.txt]
  • putative preprotein translocase SECY protein [Arabidopsis thaliana]gi|27363258|gb|AAO11548.1| At2g18710/MSF3.9 [Arabidopsis thaliana]gi|17473607|gb|AAL38269.1| putative preprotein translocase SECY protein [Arabidopsis thaliana]gi|16604410|gb|AAL24211.1 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Preprotein translocase secY subunit, chloroplast precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SCY1 | SCY1 (SECY HOMOLOG 1); P-P-bond-hydrolysis-driven protein transmembrane transporter | chr2:8119313-8121534 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein translocase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative preprotein translocase SECY protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g18710/MSF3.9 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Preprotein translocase secY subunit, chloroplast precursor (CpSecY) [nr-271106-contam.fasta]
  • | Symbols: SCY1 | SECY homolog 1 | chr2:8112231-8114452 REVERSE LENGTH=551 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 551 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    membrane [ISS]
    Biological Process: protein transport [IEA]
    protein secretion [ISS]
    Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL  60
   61 GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP SFESSSGNRR DKPSSGRGVA 120
  121 AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST 180
  181 LDTFSGGGIG RLGICSLGIV PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY 240
  241 ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS 300
  301 LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA 360
  361 SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT LARFTGISAL KNVAFALTPG 420
  421 GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI 480
  481 SVLGSAFLAV LAAGPAVVEQ ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN 540
  541 IEFYELDKYD P

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] deduced N/A No confident structure predictions are available.
    2 View Details [126..551] PSI-BLAST 110.0 Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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