YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCY1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	141	0.94
Transmembrane Helix	142	161	0.79
Non-Cytoplasmic	162	188	0.81
Transmembrane Helix	189	209	0.80
Cytoplasmic	210	236	0.85
Transmembrane Helix	237	257	0.91
Non-Cytoplasmic	258	265	0.83
Transmembrane Helix	266	286	0.93
Cytoplasmic	287	294	0.86
Transmembrane Helix	295	316	0.87
Non-Cytoplasmic	317	327	0.85
Transmembrane Helix	328	348	0.94
Cytoplasmic	349	381	0.91
Transmembrane Helix	382	402	0.80
Non-Cytoplasmic	403	414	0.70
Transmembrane Helix	415	439	0.74
Cytoplasmic	440	475	0.90
Transmembrane Helix	476	497	0.90
Non-Cytoplasmic	498	503	0.80
Transmembrane Helix	504	526	0.79
Cytoplasmic	527	551	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL  60
   61 GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP SFESSSGNRR DKPSSGRGVA 120
  121 AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST 180
  181 LDTFSGGGIG RLGICSLGIV PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY 240
  241 ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS 300
  301 LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA 360
  361 SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT LARFTGISAL KNVAFALTPG 420
  421 GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI 480
  481 SVLGSAFLAV LAAGPAVVEQ ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN 540
  541 IEFYELDKYD P