YRC Public Data Repository - Protein Structure Prediction

Protein:	SCY1_ARATH
Organism:	Arabidopsis thaliana
Length:	551 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCY1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|1049293 - gi\|1049293\|gb\|AAB60305.1\| SecY homolog; targetted to the thylakoid membrane; the protein has a chlor...	521.0	[0..1]	[551..1]
gi\|71845602, gi\|... - gi\|71905981\|ref\|YP_283568.1\| preprotein translocase subunit SecY [Dechloromonas aromatica RCB], gi\|7...	506.0	[0..122]	[551..1]
gi\|254717718 - gi\|254717718\|ref\|ZP_05179529.1\| preprotein translocase subunit SecY [Brucella ceti M13/05/1] gi\|254719271 - gi\|254719271\|ref\|ZP_05181082.1\| preprotein translocase subunit SecY [Brucella sp. 83/13] gi\|161335980, gi... - gi\|161619169\|ref\|YP_001593056.1\| preprotein translocase subunit SecY [Brucella canis ATCC 23365], gi... gi\|17982717, gi\|... - gi\|17987060\|ref\|NP_539694.1\| preprotein translocase subunit SecY [Brucella melitensis 16M], gi\|17982... gi\|25302564 - pir\|\|AC3349 protein translocase chain secY [imported] - Brucella melitensis (strain 16M) gi\|23502090, gi\|... - gi\|23502090\|ref\|NP_698217.1\| preprotein translocase subunit SecY [Brucella suis 1330], gi\|23348049\|g... gi\|254706606 - gi\|254706606\|ref\|ZP_05168434.1\| preprotein translocase subunit SecY [Brucella pinnipedialis M163/99/... gi\|254714281 - gi\|254714281\|ref\|ZP_05176092.1\| preprotein translocase subunit SecY [Brucella ceti M644/93/1] gi\|225852710, gi... - gi\|225852710\|ref\|YP_002732943.1\| preprotein translocase, SecY subunit [Brucella melitensis ATCC 2345... gi\|254704498 - gi\|254704498\|ref\|ZP_05166326.1\| preprotein translocase subunit SecY [Brucella suis bv. 3 str. 686]	500.0	[0..119]	[549..1]
gi\|114539289, gi... - gi\|114704504\|ref\|ZP_01437412.1\| preprotein translocase SecY [Fulvimarina pelagi HTCC2506], gi\|114539...	499.0	[0..119]	[549..1]
gi\|114327238, gi... - gi\|114327238\|ref\|YP_744395.1\| preprotein translocase subunit SecY [Granulibacter bethesdensis CGDNIH...	499.0	[0..119]	[550..1]
gi\|189019934, gi... - gi\|189024362\|ref\|YP_001935130.1\| C-5 cytosine-specific DNA methylase [Brucella abortus S19], gi\|1890... gi\|82616148 - gi\|82616148\|emb\|CAJ11191.1\| C-5 cytosine-specific DNA methylase:SecY protein [Brucella melitensis bi... gi\|254693918 - gi\|254693918\|ref\|ZP_05155746.1\| preprotein translocase subunit SecY [Brucella abortus bv. 3 str. Tul... gi\|254697568 - gi\|254697568\|ref\|ZP_05159396.1\| preprotein translocase subunit SecY [Brucella abortus bv. 2 str. 86/... gi\|237815632, gi... - gi\|237815632\|ref\|ZP_04594629.1\| preprotein translocase, SecY subunit [Brucella abortus str. 2308 A],... gi\|254689433 - gi\|254689433\|ref\|ZP_05152687.1\| preprotein translocase subunit SecY [Brucella abortus bv. 6 str. 870... gi\|254730462 - gi\|254730462\|ref\|ZP_05189040.1\| preprotein translocase subunit SecY [Brucella abortus bv. 4 str. 292... gi\|62196256, gi\|... - gi\|62290124\|ref\|YP_221917.1\| preprotein translocase subunit SecY [Brucella abortus bv. 1 str. 9-941]... gi\|82700047 - gi\|82700047\|ref\|YP_414621.1\| preprotein translocase subunit SecY [Brucella melitensis biovar Abortus...	499.0	[0..119]	[549..1]
gi\|92117118, gi\|... - gi\|92117118\|ref\|YP_576847.1\| preprotein translocase subunit SecY [Nitrobacter hamburgensis X14], gi\|...	495.0	[0..119]	[550..1]
gi\|85715111, gi\|... - gi\|85715111\|ref\|ZP_01046095.1\| preprotein translocase SecY [Nitrobacter sp. Nb-311A], gi\|85698026\|gb...	495.0	[0..119]	[550..1]
gi\|13470571, gi\|... - gi\|14021313\|dbj\|BAB47926.1\| secretion protein; SecY [Mesorhizobium loti MAFF303099], gi\|13470571\|ref...	493.0	[0..119]	[549..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL  60
   61 GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP SFESSSGNRR DKPSSGRGVA 120
  121 AAIED

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [126-551]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSIDFGDFFK GPLPGKFLKL LGFLALSRLG IYIPLGGVNR EAFVGNLDQN SILSTLDTFS  60
   61 GGGIGRLGIC SLGIVPFINA QIVFQLLAQV YPKLQDLQKK EGEAGRKKIL QYTRYASVGF 120
  121 AIVQAIGQVF YLRPYVNDFS TEWVVSSVTL LTLGSVLTTY IGERISDLKL GNGTSLLIFT 180
  181 SIISYLPASF GRTTAEALQE GNYTGLGTIV VSFLLLVLGI VYVQEAERKI PLNYASRYTS 240
  241 KAGGLQKSAY LPFKVNSAGV MPIIFSTSSL ALPATLARFT GISALKNVAF ALTPGGSFYL 300
  301 PTNILLIAFF NYYYTFLQLD PDDVSEQLKR QGASIPLVRP GKSTALFIKT VLGRISVLGS 360
  361 AFLAVLAAGP AVVEQITHLT AFRGFAGTSV LILVGCATDT ARKVQAEIIS QKYKNIEFYE 420
  421 LDKYDP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	2akhY
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits