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Protein Overview: SY122_ARATH

General Information:
Name(s) found: SY122_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||T08459 hypothetical protein F22O6.220 - Arabidopsis thaliana [NCBI NR]
  • gi|4886287|emb|CAB43444.1| syntaxin-like protein synt4 [Arabidopsis thaliana] [NCBI NR]
  • gi|28380140|sp|Q9SVC2.1|SY122_ARATH RecName: Full=Syntaxin-122; Short=AtSYP122; AltName: Full=Synt4 [NCBI NR]
  • gi|24417512|gb|AAN60366.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|20259663|gb|AAM14349.1| putative syntaxin synt4 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15292947|gb|AAK93584.1| putative syntaxin protein synt4 [Arabidopsis thaliana] [NCBI NR]
  • gi|15231205|ref|NP_190808.1| SYP122 (SYNTAXIN OF PLANTS 122); SNAP receptor [Arabidopsis thaliana] [NCBI NR]
  • Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1 [Swiss-Prot]
  • (Q9SVC2) Syntaxin 122 (AtSYP122) (Synt4) [Swiss-Prot]
  • unknown [Arabidopsis thaliana]gi|20259663|gb|AAM14349.1| putative syntaxin synt4 protein [Arabidopsis thaliana]gi|15292947|gb|AAK93584.1| putative syntaxin protein synt4 [Arabidopsis thaliana]gi|4886287|emb|CAB43444.1| syntaxin-like protein synt4 [Arab [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Syntaxin 122 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATSYP122, SYP122 | SYP122 (syntaxin 122); SNAP receptor | chr3:19436813-19438010 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative syntaxin protein synt4 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • syntaxin-like protein synt4 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Syntaxin-122 (AtSYP122) (Synt4) [nr-271106-contam.fasta]
  • putative syntaxin synt4 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • SYP122; t-SNARE [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SYP122, ATSYP122 | syntaxin of plants 122 | chr3:19425835-19427032 REVERSE LENGTH=341 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 341 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: regulation of plant-type hypersensitive response [IGI]
    cellular membrane fusion [TAS]
    negative regulation of cellular defense response [IGI]
    salicylic acid mediated signaling pathway [IGI]
    negative regulation of programmed cell death [IGI]
    intracellular protein transport [ISS][TAS]
    defense response to fungus [IGI]
    jasmonic acid mediated signaling pathway [IGI]
    protein targeting to membrane [IDA]
    Molecular Function: SNAP receptor activity [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLLSGSFK TSVADGSSPP HSHNIEMSKA KVSGGSCHGG NNLDTFFLDV EVVNEDLKEL  60
   61 DRLCHNLRSS NEQSKTLHNA NAVKELKKKM DADVTAALKT ARRLKGNLEA LDRANEVNRS 120
  121 LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD 180
  181 EATLERLIST GESETFLQKA IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM 240
  241 AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI 300
  301 VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..341] PSI-BLAST 31.69897 Syntaxin 1A N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNAP receptor activity
    		•  3.50393203740159 bayes_pls_golite062009
  • calcium channel inhibitor activity
    		•  3.28773614634352 bayes_pls_golite062009
  • protein transporter activity
    		•  2.96543140800925 bayes_pls_golite062009
  • binding
    		•  2.76125772097759 bayes_pls_golite062009
  • protein binding
    		•  2.66728689880621 bayes_pls_golite062009
  • phosphatidic acid binding
    		•  1.86538766580551 bayes_pls_golite062009
  • SNARE binding
    		•  1.85060343142976 bayes_pls_golite062009
  • transporter activity
    		•  1.74189664015129 bayes_pls_golite062009
  • myosin head/neck binding
    		•  1.62782051964352 bayes_pls_golite062009
  • extracellular ligand-gated ion channel activity
    		•  1.54368755758216 bayes_pls_golite062009
  • excitatory extracellular ligand-gated ion channel activity
    		•  1.54368755758216 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.49085442233849 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.37325757539281 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.13101548288086 bayes_pls_golite062009
  • calcium channel regulator activity
    		•  1.03966990325407 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.643064875848901 bayes_pls_golite062009
  • gated channel activity
    		•  0.621670335227137 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  0.41937155561589 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  0.41937155561589 bayes_pls_golite062009
  • extracellular-glutamate-gated ion channel activity
    		•  0.394485000881621 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.370484918396857 bayes_pls_golite062009
  • myosin heavy chain binding
    		•  0.29109171472743 bayes_pls_golite062009
  • myosin binding
    		•  0.17223293441022 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • channel activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.0435980899803177 bayes_pls_golite062009
  • phospholipid binding
    		•  0.0172309833091902 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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