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Protein Overview: RU17_ARATH

General Information:
Name(s) found: RU17_ARATH [Swiss-Prot]
Description(s) found:
Found 19 descriptions.
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  • U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 427 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: nuclear mRNA splicing, via spliceosome [IDA]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP  60
   61 PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ KRERIHKLRL EKGVEKAAED 120
  121 LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG 180
  181 YAFIEYMHTR DMKAAYKQAD GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE 240
  241 EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH 300
  301 RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY 360
  361 EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY DKMEEDDFRY EREYKRSKRS 420
  421 ESREYVR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..222] PSI-BLAST 20.39794 Hu antigen D (Hud)
    2 View Details [223..336] PSI-BLAST 14.522879 HNRNP A1 (RBD1,2) FROM HOMO SAPIENS
    3 View Details [337..427] MSA 2.363995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle