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Protein Overview: RT19_ARATH

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..212] PSI-BLAST 32.522879 HNRNP A1 (RBD1,2) FROM HOMO SAPIENS

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • structural molecule activity
  • 5.14791608992418 bayes_pls_golite062009
  • RNA binding
  • 4.50438526063124 bayes_pls_golite062009
  • nucleic acid binding
  • 3.2381342715237 bayes_pls_golite062009
  • binding
  • 3.06679562635705 bayes_pls_golite062009
  • mRNA binding
  • 2.92795844574986 bayes_pls_golite062009
  • 1.49431666307335 bayes_pls_golite062009
  • protein binding
  • 1.32954276279597 bayes_pls_golite062009
  • single-stranded RNA binding
  • 0.90573796517364 bayes_pls_golite062009
  • translation regulator activity
  • 0.38120065819101 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 0.32812362201346 bayes_pls_golite062009
  • DNA binding
  • 0.139020718026377 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.128616879457381 bayes_pls_golite062009
  • transcription regulator activity
  • 0.0995666109361987 bayes_pls_golite062009
  • snoRNA binding
  • 0.0568636182001701 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle