| Protein: | RT19_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 212 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT19_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
165.0 | [0..1] | [212..33] |
|
Region A: Residues: [1-212] |
1 11 21 31 41 51
| | | | | |
1 MAFCTKLGGH WKQGVNVPVS SMLGSLRYMS TKLYIGGLSP GTDEHSLKDA FSSFNGVTEA 60
61 RVMTNKVTGR SRGYGFVNFI SEDSANSAIS AMNGQELNGF NISVNVAKDW PSLPLSLDES 120
121 IEEAEKKENK MMSRSVWKDP FVDAFLMKKK NAALNRKIWS RRSTILPEYV DSAVRIYNGK 180
181 THVRCKITEG KVGHKFGEFA FTRKVKKHAK AK
|
| Detection Method: |  |
| Confidence: | 32.522879 |
| Match: | 1ha1A |
| Description: | HNRNP A1 (RBD1,2) FROM HOMO SAPIENS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural molecule activity | 5.14791608992418 | bayes_pls_golite062009 |
| RNA binding | 4.50438526063124 | bayes_pls_golite062009 |
| nucleic acid binding | 3.2381342715237 | bayes_pls_golite062009 |
| binding | 3.06679562635705 | bayes_pls_golite062009 |
| mRNA binding | 2.92795844574986 | bayes_pls_golite062009 |
| 1.49431666307335 | bayes_pls_golite062009 | |
| protein binding | 1.32954276279597 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.90573796517364 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.32812362201346 | bayes_pls_golite062009 |
| DNA binding | 0.139020718026377 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0995666109361987 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
