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Protein Overview: RPOT1_ARATH

General Information:
Name(s) found: RPOT1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|3914832|sp|P92969.1|RPOT1_ARATH RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; Flags: Precursor [NCBI NR]
  • pir||D96714 DNA-directed RNA polymerase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|2330566|emb|CAA70210.1| mitochondrial single-subunit DNA-dependent RNA polymerase [Arabidopsis thaliana] [NCBI NR]
  • gi|1742971|emb|CAA70583.1| mitochondrial singel subunit DNA-directed RNA polymerase [Arabidopsis thaliana] [NCBI NR]
  • gi|15221580|ref|NP_177063.1| DNA-directed RNA polymerase, mitochondrial (RPOMT) [Arabidopsis thaliana] [NCBI NR]
  • gi|12323220|gb|AAG51592.1|AC011665_13 DNA-directed RNA polymerase [Arabidopsis thaliana] [NCBI NR]
  • DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1 [Swiss-Prot]
  • (P92969) DNA-directed RNA polymerase, mitochondrial precursor (EC 2.7.7.6) [Swiss-Prot]
  • mitochondrial singel subunit DNA-directed RNA polymerase [Arabidopsis thaliana]gi|2330566|emb|CAA70210.1| mitochondrial single-subunit DNA-dependent RNA polymerase [Arabidopsis thaliana]gi|3914832|sp|P92969|RPOM_ARATH DNA-directed RNA polymerase, mitoch [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNA-directed RNA polymerase, mitochondrial precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DNA-directed RNA polymerase, mitochondrial (RPOMT) | chr1:25939162-25944418 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • mitochondrial single-subunit DNA-dependent RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA-directed RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • mitochondrial singel subunit DNA-directed RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA-directed RNA polymerase 1, mitochondrial precursor [nr-271106-contam.fasta]
  • | Symbols: MGP3 | male gametophyte defective 3 | chr1:25935499-25940755 REVERSE LENGTH=976 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 976 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: embryonic development [IMP]
    transcription [ISS]
    pollen tube growth [IMP]
    ovule development [IMP]
    Molecular Function: DNA binding [IEA][ISS]
    DNA-directed RNA polymerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS  60
   61 SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT EMEKETERIR KKARLAAIPP 120
  121 KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW 180
  181 FEPVRNAIQD DLDTFKIKKG KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL 240
  241 VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL 300
  301 MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP 360
  361 AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM VIPYLPMLIP PQNWTGYDQG 420
  421 AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA 480
  481 NGGRIGGLVD REDVPIPEEP EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR 540
  541 KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA 600
  601 NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL 660
  661 RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN LVTGEKPADV YTEIAARVLK 720
  721 IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT 780
  781 FEDDSLTFHA SCYAAKITLK ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV 840
  841 VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA 900
  901 GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER 960
  961 GDFDLRKVLE STYFFN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] deduced N/A No confident structure predictions are available.
    2 View Details [109..976] PSI-BLAST 1000.0 No description for 2pi4A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
    		•  2.6108181024665 bayes_pls_golite062009
  • DNA polymerase activity
    		•  2.44559689391189 bayes_pls_golite062009
  • binding
    		•  1.92492422240469 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.91613633231111 bayes_pls_golite062009
  • DNA binding
    		•  1.87721092677049 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64235873416087 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.27315947864674 bayes_pls_golite062009
  • catalytic activity
    		•  1.04899053677564 bayes_pls_golite062009
  • transferase activity
    		•  0.784455099927681 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.71851976892484 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.71851976892484 bayes_pls_golite062009
  • chromatin binding
    		•  0.404154229010129 bayes_pls_golite062009
  • protein binding
    		•  0.154150082587708 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle