| Protein: | RPOT1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 976 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPOT1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
1390.0 | [0..1] | [976..1] |
|
Region A: Residues: [1-108] |
1 11 21 31 41 51
| | | | | |
1 MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS 60
61 SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT EMEKETER
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [109-976] |
1 11 21 31 41 51
| | | | | |
1 IRKKARLAAI PPKRVIAGMG AQKFYMLKQR QVKMETEEWE RAARECREIL ADMCEQKLAP 60
61 NLPYMKSLFL GWFEPVRNAI QDDLDTFKIK KGKIPYAPFM EQLPADKMAV ITMHKMMGLL 120
121 MTNAEGVGIV KLVNAATQIG EAVEQEVRIN SFLQKKNKKN ATDKTINTEA ENVSEEIVAK 180
181 ETEKARKQVT VLMEKNKLRQ VKALVRKHDS FKPWGQEAQV KVGARLIQLL MENAYIQPPA 240
241 EQFDDGPPDI RPAFKQNFRT VTLENTKTSR RYGCIECDPL VLKGLDKSAR HMVIPYLPML 300
301 IPPQNWTGYD QGAHFFLPSY VMRTHGAKQQ RTVMKRTPKE QLEPVYEALD TLGNTKWKIN 360
361 KKVLSLVDRI WANGGRIGGL VDREDVPIPE EPEREDQEKF KNWRWESKKA IKQNNERHSQ 420
421 RCDIELKLEV ARKMKDEEGF YYPHNVDFRG RAYPIHPYLN HLGSDLCRGI LEFCEGKPLG 480
481 KSGLRWLKIH IANLYAGGVD KLAYEDRIAF TESHLEDIFD SSDRPLEGKR WWLNAEDPFQ 540
541 CLAACINLSE ALRSPFPEAA ISHIPIHQDG SCNGLQHYAA LGRDKLGADA VNLVTGEKPA 600
601 DVYTEIAARV LKIMQQDAEE DPETFPNATY AKLMLDQVDR KLVKQTVMTS VYGVTYSGAR 660
661 DQIKKRLKER GTFEDDSLTF HASCYAAKIT LKALEEMFEA ARAIKSWFGD CAKIIASENN 720
721 AVCWTTPLGL PVVQPYRKPG RHLVKTTLQV LTLSRETDKV MARRQMTAFA PNFIHSLDGS 780
781 HMMMTAVACN RAGLSFAGVH DSFWTHACDV DVMNTILREK FVELYEKPIL ENLLESFQKS 840
841 FPDISFPPLP ERGDFDLRKV LESTYFFN
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 2pi4A |
| Description: | No description for 2pi4A was found. |
| Term | Confidence | Notes |
| DNA-directed DNA polymerase activity | 2.6108181024665 | bayes_pls_golite062009 |
| DNA polymerase activity | 2.44559689391189 | bayes_pls_golite062009 |
| binding | 1.92492422240469 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.91613633231111 | bayes_pls_golite062009 |
| DNA binding | 1.87721092677049 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64235873416087 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.27315947864674 | bayes_pls_golite062009 |
| catalytic activity | 1.04899053677564 | bayes_pls_golite062009 |
| transferase activity | 0.784455099927681 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.71851976892484 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.71851976892484 | bayes_pls_golite062009 |
| chromatin binding | 0.404154229010129 | bayes_pls_golite062009 |
| protein binding | 0.154150082587708 | bayes_pls_golite062009 |
