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Protein Overview: RK4_ARATH

General Information:
Name(s) found: RK4_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • 50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 282 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    nucleus [IDA]
    chloroplast [IDA]
    cytosolic ribosome [IDA]
    membrane [IDA]
    ribosome [ISS]
    plastid large ribosomal subunit [TAS]
    plastid ribosome [IPI]
    thylakoid [IDA]
    chloroplast thylakoid membrane [IDA]
    Biological Process: translation [ISS][TAS]
    Molecular Function: structural constituent of ribosome [ISS]
    poly(U) RNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE  60
   61 GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS TLTRGEVRGG GIKPYSQKKT 120
  121 GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF 180
  181 GEKFEKPKTK DFLAAMQRWG LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD 240
  241 ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEGSE EA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..282] PSI-BLAST 60.30103 70S ribosome functional complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.46714384821627 bayes_pls_golite062009
  • structural molecule activity
    		•  8.89019844429202 bayes_pls_golite062009
  • binding
    		•  0.760534889948966 bayes_pls_golite062009
  • RNA binding
    		•  0.514741551458219 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.491336126355036 bayes_pls_golite062009
  • protein binding
    		•  0.251893544682399 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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