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Protein Overview: PSY_ARATH

General Information:
Name(s) found: PSY_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 422 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: carotenoid biosynthetic process [IMP]
    Molecular Function: phytoene synthase activity [TAS]
    geranylgeranyl-diphosphate geranylgeranyltransferase activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSVAVLWV ATSSLNPDPM NNCGLVRVLE SSRLFSPCQN QRLNKGKKKQ IPTWSSSFVR  60
   61 NRSRRIGVVS SSLVASPSGE IALSSEEKVY NVVLKQAALV NKQLRSSSYD LDVKKPQDVV 120
  121 LPGSLSLLGE AYDRCGEVCA EYAKTFYLGT LLMTPERRKA IWAIYVWCRR TDELVDGPNA 180
  181 SHITPMALDR WEARLEDLFR GRPFDMLDAA LADTVARYPV DIQPFRDMIE GMRMDLKKSR 240
  241 YQNFDDLYLY CYYVAGTVGL MSVPVMGIDP KSKATTESVY NAALALGIAN QLTNILRDVG 300
  301 EDARRGRVYL PQDELAQAGL SDEDIFAGKV TDKWRNFMKM QLKRARMFFD EAEKGVTELS 360
  361 AASRWPVWAS LLLYRRILDE IEANDYNNFT KRAYVGKVKK IAALPLAYAK SVLKTSSSRL 420
  421 SI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] MSA 1.061972 View MSA. No confident structure predictions are available.
    2 View Details [120..422] PSI-BLAST 56.0 Squalene synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.87397377711135 bayes_pls_golite062009
  • transferase activity
    		•  1.34929557841705 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  1.22586398285056 bayes_pls_golite062009
  • prenyltransferase activity
    		•  0.302854173865421 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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