YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSY_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSVAVLWV ATSSLNPDPM NNCGLVRVLE SSRLFSPCQN QRLNKGKKKQ IPTWSSSFVR  60
   61 NRSRRIGVVS SSLVASPSGE IALSSEEKVY NVVLKQAALV NKQLRSSSYD LDVKKPQDVV 120
  121 LPGSLSLLGE AYDRCGEVCA EYAKTFYLGT LLMTPERRKA IWAIYVWCRR TDELVDGPNA 180
  181 SHITPMALDR WEARLEDLFR GRPFDMLDAA LADTVARYPV DIQPFRDMIE GMRMDLKKSR 240
  241 YQNFDDLYLY CYYVAGTVGL MSVPVMGIDP KSKATTESVY NAALALGIAN QLTNILRDVG 300
  301 EDARRGRVYL PQDELAQAGL SDEDIFAGKV TDKWRNFMKM QLKRARMFFD EAEKGVTELS 360
  361 AASRWPVWAS LLLYRRILDE IEANDYNNFT KRAYVGKVKK IAALPLAYAK SVLKTSSSRL 420
  421 SI

Type	Start	End	Confidence
Signal Peptide	1	17	0.83
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	422	0.98