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Protein Overview: PPOC_ARATH

General Information:
Name(s) found: PPOC_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7268212|emb|CAB77739.1| protoporphyrinogen oxidase [Arabidopsis thaliana] [NCBI NR]
  • gi|58331767|gb|AAW70381.1| At4g01690 [Arabidopsis thaliana] [NCBI NR]
  • gi|56550711|gb|AAV97809.1| At4g01690 [Arabidopsis thaliana] [NCBI NR]
  • pir||G85021 protoporphyrinogen oxidase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|2495184|sp|P55826.1|PPOC_ARATH RecName: Full=Protoporphyrinogen oxidase, chloroplastic; Short=PPO; Flags: Precursor [NCBI NR]
  • gi|1877018|dbj|BAA11820.1| protoporphyrinogen oxidase [Arabidopsis thaliana] [NCBI NR]
  • gi|15234278|ref|NP_192078.1| PPOX; protoporphyrinogen oxidase [Arabidopsis thaliana] [NCBI NR]
  • Protoporphyrinogen oxidase 1, chloroplastic OS=Arabidopsis thaliana GN=PPOX1 PE=1 SV=1 [Swiss-Prot]
  • (P55826) Protoporphyrinogen oxidase, chloroplast precursor (EC 1.3.3.4) (PPO) [athaliana3702.FASTAC.txt]
  • protoporphyrinogen oxidase [Arabidopsis thaliana]gi|2495184|sp|P55826|PPOC_ARATH Protoporphyrinogen oxidase, chloroplast precursor (PPO)gi|25407122|pir||G85021 protoporphyrinogen oxidase [imported] - Arabidopsis thalianagi|15234278|ref|NP_192078.1| pro [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Protoporphyrinogen oxidase, chloroplast precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: HEMG1, PPOX | PPOX (PROTOPORPHYRINOGEN OXIDASE); protoporphyrinogen oxidase | chr4:729929-732309 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At4g01690 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protoporphyrinogen oxidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Protoporphyrinogen oxidase, chloroplast precursor (PPO) [nr-271106-contam.fasta]
  • PPOX; protoporphyrinogen oxidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PPOX, HEMG1, PPO1 | Flavin containing amine oxidoreductase family | chr4:729929-732309 FORWARD LENGTH=537 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana GN=PPOX PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 537 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    chloroplast envelope [IDA]
    Biological Process: porphyrin biosynthetic process [TAS]
    Molecular Function: oxygen-dependent protoporphyrinogen oxidase activity [IGI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSLLRPTT QSLLPSFSKP NLRLNVYKPL RLRCSVAGGP TVGSSKIEGG GGTTITTDCV  60
   61 IVGGGISGLC IAQALATKHP DAAPNLIVTE AKDRVGGNII TREENGFLWE EGPNSFQPSD 120
  121 PMLTMVVDSG LKDDLVLGDP TAPRFVLWNG KLRPVPSKLT DLPFFDLMSI GGKIRAGFGA 180
  181 LGIRPSPPGR EESVEEFVRR NLGDEVFERL IEPFCSGVYA GDPSKLSMKA AFGKVWKLEQ 240
  241 NGGSIIGGTF KAIQERKNAP KAERDPRLPK PQGQTVGSFR KGLRMLPEAI SARLGSKVKL 300
  301 SWKLSGITKL ESGGYNLTYE TPDGLVSVQS KSVVMTVPSH VASGLLRPLS ESAANALSKL 360
  361 YYPPVAAVSI SYPKEAIRTE CLIDGELKGF GQLHPRTQGV ETLGTIYSSS LFPNRAPPGR 420
  421 ILLLNYIGGS TNTGILSKSE GELVEAVDRD LRKMLIKPNS TDPLKLGVRV WPQAIPQFLV 480
  481 GHFDILDTAK SSLTSSGYEG LFLGGNYVAG VALGRCVEGA YETAIEVNNF MSRYAYK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..537] PSI-BLAST 43.39794 Crystal Structure of Protoporphyrinogen IX Oxidase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity, acting on NADH or NADPH
    		•  5.26950448055146 bayes_pls_golite062009
  • oxidoreductase activity
    		•  4.51724585323847 bayes_pls_golite062009
  • oxygen-dependent protoporphyrinogen oxidase activity
    		•  1.3578742399915 bayes_pls_golite062009
  • binding
    		•  1.26657667590853 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  1.20561532241252 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors
    		•  1.07656675953489 bayes_pls_golite062009
  • catalytic activity
    		•  1.03127962968326 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH group of donors
    		•  0.945028138297487 bayes_pls_golite062009
  • transporter activity
    		•  0.890824576391732 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.706117386114413 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  0.705416796630992 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.491481205015383 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.386071802386842 bayes_pls_golite062009
  • NADPH-adrenodoxin reductase activity
    		•  0.31749398611457 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.284200164472054 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.26114823844682 bayes_pls_golite062009
  • DNA binding
    		•  0.175069486065946 bayes_pls_golite062009
  • ferrous iron binding
    		•  0.166200528859874 bayes_pls_golite062009
  • protein binding
    		•  0.0281459437915129 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle