YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PLY3_ARATH

General Information:
Name(s) found: PLY3_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|7262684|gb|AAF43942.1|AC012188_19 Strong similarity to Pectate Lyase Precursor from Lilium longiflorum gi|730290 and contains a Pectate lyase PF|00544 domain. EST gb|AW004514 comes from this gene. [Arabidopsis thaliana] [NCBI NR]
  • gi|51970414|dbj|BAD43899.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51970368|dbj|BAD43876.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51970102|dbj|BAD43743.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51969924|dbj|BAD43654.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51969836|dbj|BAD43610.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51969744|dbj|BAD43564.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|34222070|gb|AAQ62871.1| At1g14420 [Arabidopsis thaliana] [NCBI NR]
  • gi|32129849|sp|Q9M9S2.1|PEL3_ARATH RecName: Full=Probable pectate lyase 3; AltName: Full=Pectate lyase A2; Flags: Precursor [NCBI NR]
  • gi|25320901|pir||G86278 hypothetical protein F14L17.19 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15223751|ref|NP_172894.1| AT59; lyase/ pectate lyase [Arabidopsis thaliana] [NCBI NR]
  • Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1 [Swiss-Prot]
  • (Q9M9S2) Probable pectate lyase 3 precursor (EC 4.2.2.2) (Pectate lyase A2) [athaliana3702.FASTAC.txt]
  • At1g14420 [Arabidopsis thaliana]gi|51970414|dbj|BAD43899.1| hypothetical protein [Arabidopsis thaliana]gi|51970368|dbj|BAD43876.1| hypothetical protein [Arabidopsis thaliana]gi|51970102|dbj|BAD43743.1| hypothetical protein [Arabidopsis thaliana]gi|519 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Probable pectate lyase 3 precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AT59 | AT59 (Arabidopsis homolog of tomato LAT59); lyase/ pectate lyase | chr1:4931839-4933400 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Strong similarity to Pectate Lyase Precursor from Lilium longiflorum gi|730290 and contains a Pectate lyase PF|00544 domain. EST gb|AW004514 comes from this gene. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein F14L17.19 [imported] - Arabidopsis thaliana [nr-271106-contam.fasta]
  • Probable pectate lyase 3 precursor (Pectate lyase A2) [nr-271106-contam.fasta]
  • AT59; lyase/ pectate lyase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g14420 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AT59 | Pectate lyase family protein | chr1:4931844-4933405 REVERSE LENGTH=459 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 459 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: plant-type cell wall organization [TAS]
    Molecular Function: pectate lyase activity [ISS]
    lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV  60
   61 TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK CLAYNPIDNC WRCDRNWANN 120
  121 RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM 180
  181 IIKLQQELMI TSDKTIDGRG ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS 240
  241 EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV 300
  301 MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN 360
  361 PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE GDYFLNGAYF VQSGKANAWS 420
  421 SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] Pfam 32.823909 No description for PF04431.4 was found. No confident structure predictions are available.
    2 View Details [105..459] PSI-BLAST 71.221849 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.142826098671881 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle