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View Structure Prediction Details

Protein: PLY3_ARATH
Organism: Arabidopsis thaliana
Length: 459 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLY3_ARATH.

Description E-value Query
Range
Subject
Range
gi|2281334 - gi|2281334|gb|AAB69759.1| putative pectate lyase [Arabidopsis thaliana]
478.0 [0..1] [459..1]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV  60
   61 TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK CLAY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 32.823909
Match: PF04431.4
Description: No description for PF04431.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPIDNCWRCD RNWANNRKKL ADCVLGFGRR TTGGKDGPIY VVKDASDNDL INPKPGTLRH  60
   61 AVTRDGPLWI IFARSMIIKL QQELMITSDK TIDGRGARVY IMEGAGLTLQ FVNNVIIHNI 120
  121 YVKHIVPGNG GLIRDSEAHI GLRTKSDGDG ISLFGATNIW IDHVSMTRCA DGMIDAIDGS 180
  181 TAVTISNSHF TDHQEVMLFG ARDEHVIDKK MQITVAFNHF GKRLEQRMPR CRYGTIHVVN 240
  241 NDYTHWEMYA IGGNMNPTII SQGNRFIAPP NEEAKQITKR EYTPYGEWKS WNWQSEGDYF 300
  301 LNGAYFVQSG KANAWSSKPK TPLPNKFTIR PKPGTMVRKL TMDAGVLGCK LGEAC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.221849
Match: 1pxzA
Description: 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142826098671881 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle