YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLY3_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV  60
   61 TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK CLAYNPIDNC WRCDRNWANN 120
  121 RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM 180
  181 IIKLQQELMI TSDKTIDGRG ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS 240
  241 EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV 300
  301 MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN 360
  361 PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE GDYFLNGAYF VQSGKANAWS 420
  421 SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC

Type	Start	End	Confidence
Signal Peptide	1	29	0.78
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	459	0.99