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Protein Overview: PAL4_ARATH

General Information:
Name(s) found: PAL4_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 707 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: L-phenylalanine catabolic process [IEA]
    biosynthetic process [IEA]
    Molecular Function: catalytic activity [IEA]
    ammonia ligase activity [IEA]
    ammonia-lyase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELCNQNNHI TAVSGDPLNW NATAEALKGS HLDEVKRMVK EYRKEAVKLG GETLTIGQVA  60
   61 AVARGGGGST VELAEEARAG VKASSEWVME SMNRGTDSYG VTTGFGATSH RRTKQGGALQ 120
  121 NELIRFLNAG IFGPGAGDTS HTLPKPTTRA AMLVRVNTLL QGYSGIRFEI LEAITKLLNH 180
  181 EITPCLPLRG TITASGDLVP LSYIAGLLTG RPNSKAVGPS GETLTASEAF KLAGVSSFFE 240
  241 LQPKEGLALV NGTAVGSGLA STVLFDANIL AVLSEVMSAM FAEVMQGKPE FTDHLTHKLK 300
  301 HHPGQIEAAA IMEHILDGSS YVKEAQLLHE MDPLQKPKQD RYALRTSPQW LGPQIEVIRA 360
  361 ATKMIEREIN SVNDNPLIDV SRNKALHGGN FQGTPIGVAM DNSRLAIASI GKLMFAQFSE 420
  421 LVNDFYNNGL PSNLSGGRNP SLDYGFKGAE IAMASYCSEL QFLANPVTNH VQSAEQHNQD 480
  481 VNSLGLISSR KTAEAVDILK LMSTTYLVAL CQAVDLRHLE ENLKKAVKSA VSQVAKRVLT 540
  541 VGANGELHPS RFTERDVLQV VDREYVFSYA DDPCSLTYPL MQKLRHILVD HALADPEREA 600
  601 NSATSVFHKI GAFEAELKLL LPKEVERVRV EYEEGTSAIA NRIKECRSYP LYRFVRDELN 660
  661 TELLTGENVR SPGEEFDKVF LAISDGKLID PLLECLKEWN GAPVSIC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..707] PSI-BLAST 1000.0 Phenylalanine ammonia-lyase (PAL) from Petroselinum crispum

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histidine ammonia-lyase activity
    		•  3.53226750625841 bayes_pls_golite062009
  • catalytic activity
    		•  2.51282259572665 bayes_pls_golite062009
  • lyase activity
    		•  2.31268471569846 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  2.2046475419807 bayes_pls_golite062009
  • amidine-lyase activity
    		•  0.901614580251298 bayes_pls_golite062009
  • argininosuccinate lyase activity
    		•  0.617974375213548 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.491229595527877 bayes_pls_golite062009
  • fumarate hydratase activity
    		•  0.364320954362762 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle