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Protein Overview: PAL2_ARATH

General Information:
Name(s) found: PAL2_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 717 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: response to oxidative stress [IEP]
    response to wounding [TAS]
    phenylpropanoid biosynthetic process [TAS]
    defense response [TAS]
    Molecular Function: phenylalanine ammonia-lyase activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQIEAMLCG GGEKTKVAVT TKTLADPLNW GLAADQMKGS HLDEVKKMVE EYRRPVVNLG  60
   61 GETLTIGQVA AISTVGGSVK VELAETSRAG VKASSDWVME SMNKGTDSYG VTTGFGATSH 120
  121 RRTKNGTALQ TELIRFLNAG IFGNTKETCH TLPQSATRAA MLVRVNTLLQ GYSGIRFEIL 180
  181 EAITSLLNHN ISPSLPLRGT ITASGDLVPL SYIAGLLTGR PNSKATGPDG ESLTAKEAFE 240
  241 KAGISTGFFD LQPKEGLALV NGTAVGSGMA SMVLFEANVQ AVLAEVLSAI FAEVMSGKPE 300
  301 FTDHLTHRLK HHPGQIEAAA IMEHILDGSS YMKLAQKVHE MDPLQKPKQD RYALRTSPQW 360
  361 LGPQIEVIRQ ATKSIEREIN SVNDNPLIDV SRNKAIHGGN FQGTPIGVSM DNTRLAIAAI 420
  421 GKLMFAQFSE LVNDFYNNGL PSNLTASSNP SLDYGFKGAE IAMASYCSEL QYLANPVTSH 480
  481 VQSAEQHNQD VNSLGLISSR KTSEAVDILK LMSTTFLVGI CQAVDLRHLE ENLRQTVKNT 540
  541 VSQVAKKVLT TGINGELHPS RFCEKDLLKV VDREQVFTYV DDPCSATYPL MQRLRQVIVD 600
  601 HALSNGETEK NAVTSIFQKI GAFEEELKAV LPKEVEAARA AYGNGTAPIP NRIKECRSYP 660
  661 LYRFVREELG TKLLTGEKVV SPGEEFDKVF TAMCEGKLID PLMDCLKEWN GAPIPIC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..717] PSI-BLAST 1000.0 Phenylalanine ammonia-lyase (PAL) from Petroselinum crispum

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histidine ammonia-lyase activity
    		•  3.53226750625841 bayes_pls_golite062009
  • catalytic activity
    		•  2.51282259572665 bayes_pls_golite062009
  • lyase activity
    		•  2.31268471569846 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  2.2046475419807 bayes_pls_golite062009
  • amidine-lyase activity
    		•  0.901614580251298 bayes_pls_golite062009
  • argininosuccinate lyase activity
    		•  0.617974375213548 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.491229595527877 bayes_pls_golite062009
  • fumarate hydratase activity
    		•  0.364320954362762 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle