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Protein Overview: NDK1_ARATH

General Information:
Name(s) found: NDK1_ARATH [Swiss-Prot]
Description(s) found:
Found 24 descriptions.
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  • Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana GN=NDK1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 149 amino acids

    Gene Ontology:
    Cellular Component: peroxisome [IDA]
    chloroplast [IDA]
    apoplast [IDA]
    vacuole [IDA]
    plasma membrane [IDA]
    Biological Process: response to salt stress [IEP]
    response to cadmium ion [IEP]
    Molecular Function: ATP binding [IEA][ISS]
    nucleoside diphosphate kinase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG  60
   61 LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT IRGDFAIDIG RNVIHGSDSV 120
  121 ESARKEIALW FPDGPVNWQS SVHPWVYET

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..149] PSI-BLAST 61.39794 Crystal structure of Arabidopsis thaliana nucleoside diphosphate kinase 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleobase, nucleoside, nucleotide kinase activity
    		•  9.54806938681864 bayes_pls_golite062009
  • phosphotransferase activity, phosphate group as acceptor
    		•  8.99343206813136 bayes_pls_golite062009
  • nucleoside diphosphate kinase activity
    		•  6.31603417387406 bayes_pls_golite062009
  • kinase activity
    		•  5.17632668597727 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  4.81683227683584 bayes_pls_golite062009
  • tubulin binding
    		•  3.91203457981165 bayes_pls_golite062009
  • transferase activity
    		•  3.88584335567051 bayes_pls_golite062009
  • microtubule binding
    		•  3.30486676956703 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.90440302787538 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.33936391947568 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.14345344254908 bayes_pls_golite062009
  • DNA binding
    		•  1.9929237581784 bayes_pls_golite062009
  • binding
    		•  1.77213317402453 bayes_pls_golite062009
  • catalytic activity
    		•  1.54275558650196 bayes_pls_golite062009
  • protein binding
    		•  1.44203715518441 bayes_pls_golite062009
  • transcription factor activity
    		•  1.25823661686679 bayes_pls_golite062009
  • gamma-tubulin binding
    		•  0.715852577944201 bayes_pls_golite062009
  • ATP binding
    		•  0.642661537717629 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.611368256550302 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.594323192037838 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.548739243763112 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.548674300422543 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.538092730319695 bayes_pls_golite062009
  • nucleotide binding
    		•  0.532504383462049 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle