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Protein Overview: MEM12_ARATH

General Information:
Name(s) found: MEM12_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9758926|dbj|BAB09463.1| golgi SNARE protein [Arabidopsis thaliana] [NCBI NR]
  • gi|28827376|gb|AAO50532.1| putative Golgi SNARE protein [Arabidopsis thaliana] [NCBI NR]
  • gi|27805575|sp|Q9FK28.1|MEM12_ARATH RecName: Full=Membrin-12; Short=AtMEMB12; AltName: Full=Golgi SNAP receptor complex member 2-2 [NCBI NR]
  • gi|26450177|dbj|BAC42207.1| putative golgi SNARE protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15240673|ref|NP_199855.1| MEMB12 (MEMBRIN 12); SNAP receptor [Arabidopsis thaliana] [NCBI NR]
  • Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1 [Swiss-Prot]
  • (Q9FK28) Membrin 12 (AtMEMB12) (Golgi SNAP receptor complex member 2-2) [Swiss-Prot]
  • putative golgi SNARE protein [Arabidopsis thaliana]gi|9758926|dbj|BAB09463.1| golgi SNARE protein [Arabidopsis thaliana]gi|28827376|gb|AAO50532.1| putative Golgi SNARE protein [Arabidopsis thaliana]gi|27805575|sp|Q9FK28|ME12_ARATH Membrin 12 (AtMEMB12) [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Membrin 12 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATMEMB12, MEMB12 | MEMB12 (Golgi SNARE protein membrin 12); SNAP receptor | chr5:20554870-20555678 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • MEMB12; v-SNARE [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Membrin 12 (AtMEMB12) (Golgi SNAP receptor complex member 2-2) [nr-271106-contam.fasta]
  • golgi SNARE protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative Golgi SNARE protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative golgi SNARE protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MEMB12, ATMEMB12 | membrin 12 | chr5:20537644-20538452 REVERSE LENGTH=219 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 219 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [TAS]
    Biological Process: cellular membrane fusion [IPI]
    intra-Golgi vesicle-mediated transport [ISS]
    Molecular Function: SNAP receptor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGTVGGLS EVYSSAKRIL LRARNGIEKL ERFDSDPTDL ASSVKRDITE VQSLCSNMDG  60
   61 LWRSIPVKSQ RDLWRRKSEQ VGEEAEYLNQ SLEKYMWRNQ RKMLEAKERA DLLGRGSGEG 120
  121 AHILQIFDEE AQGMNSVKNS KRMLEDSFQS GVAILSKYAE QRDRLKSAQR KALDVLNTVG 180
  181 LSNSVLRLIE RRNRVDTWIK YAGMIATLVI LYLFIRWTR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..219] PSI-BLAST 7.30103 Syntaxin 1A N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNAP receptor activity
    		•  3.50393203740159 bayes_pls_golite062009
  • binding
    		•  1.8951551921267 bayes_pls_golite062009
  • transporter activity
    		•  1.74189664015129 bayes_pls_golite062009
  • protein binding
    		•  1.63976398283458 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.49085442233849 bayes_pls_golite062009
  • protein transporter activity
    		•  1.35810492956056 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.13101548288086 bayes_pls_golite062009
  • SNARE binding
    		•  1.11364909435982 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.643064875848901 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.370484918396857 bayes_pls_golite062009
  • phospholipid binding
    		•  0.0172309833091902 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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