YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MEM12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGTVGGLS EVYSSAKRIL LRARNGIEKL ERFDSDPTDL ASSVKRDITE VQSLCSNMDG  60
   61 LWRSIPVKSQ RDLWRRKSEQ VGEEAEYLNQ SLEKYMWRNQ RKMLEAKERA DLLGRGSGEG 120
  121 AHILQIFDEE AQGMNSVKNS KRMLEDSFQS GVAILSKYAE QRDRLKSAQR KALDVLNTVG 180
  181 LSNSVLRLIE RRNRVDTWIK YAGMIATLVI LYLFIRWTR

Type	Start	End	Confidence
Cytoplasmic	1	196	0.76
Transmembrane Helix	197	216	0.94
Non-Cytoplasmic	217	219	0.63