YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: LYM1_ARATH

General Information:
Name(s) found: LYM1_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=LYM1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 416 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    anchored to membrane [TAS]
    anchored to plasma membrane [IDA]
    Biological Process: cell wall macromolecule catabolic process [IEA][ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIPEKPIFL IFVSLILASS LTFTATAKST IEPCSSNDTC NALLGYTLYT DLKVSEVASL  60
   61 FQVDPISILL ANAIDISYPD VENHILPSKL FLKIPITCSC VDGIRKSVST HYKTRPSDNL 120
  121 GSIADSVYGG LVSAEQIQEA NSVNDPSLLD VGTSLVIPLP CACFNGTDNS LPAVYLSYVV 180
  181 KEIDTLVGIA RRYSTTITDL MNVNAMGAPD VSSGDILAVP LSACASKFPR YASDFGLIVP 240
  241 NGSYALAAGH CVQCSCALGS RNLYCEPASL AVSCSSMQCR NSNLMLGNIT VQQTSAGCNV 300
  301 TTCDYNGIAN GTILTMLTRS LQPRCPGPQQ FAPLLAPPDT VPRDVMYAPA PSPDFDGPGS 360
  361 IASSPRSSML PGGGILPGNP ANGPAGSIST ASASSVSYFF ITFLISIASF SLALSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] deduced N/A No confident structure predictions are available.
    2 View Details [97..164] FFAS03 3.23 No description for 2djpA was found.
    3 View Details [165..253] PSI-BLAST 5.0 No description for 2djpA was found.
    4 View Details [254..416] MSA 8.303995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle