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Protein Overview: HAT5_ARATH

General Information:
Name(s) found: HAT5_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||S16325 homeotic protein Athb-1 - Arabidopsis thaliana [NCBI NR]
  • gi|6016706|gb|AAF01532.1|AC009325_2 homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1) [Arabidopsis thaliana] [NCBI NR]
  • gi|399900|sp|Q02283.1|HAT5_ARATH RecName: Full=Homeobox-leucine zipper protein HAT5; AltName: Full=Homeodomain-leucine zipper protein HAT5; Short=HD-ZIP protein 5; AltName: Full=Homeodomain transcription factor ATHB-1; AltName: Full=HD-ZIP protein ATHB-1 [NCBI NR]
  • gi|20466121|gb|AAM19982.1| AT3g01470/F4P13_2 [Arabidopsis thaliana] [NCBI NR]
  • gi|16648822|gb|AAL25601.1| AT3g01470/F4P13_2 [Arabidopsis thaliana] [NCBI NR]
  • gi|16329|emb|CAA41625.1| Athb-1 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15232122|ref|NP_186796.1| ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1 [Swiss-Prot]
  • (Q02283) Homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1) [athaliana3702.FASTAC.txt]
  • homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1) [Arabidopsis thaliana]gi|16329|emb|CAA41625.1| Athb-1 protein [Arabidopsis thaliana]gi|20466121|gb|AAM19982.1| AT3g01470/F4P13_2 [Arabidopsis thaliana]gi|16648822|gb|AAL256 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Homeobox-leucine zipper protein HAT5 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATHB1, HD-ZIP-1, HAT5, ATHB-1 | ATHB-1 (Homeobox-leucine zipper protein HAT5); transcription factor | chr3:182655-184041 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT3g01470/F4P13_2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATHB-1; transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1) [nr-271106-contam.fasta]
  • Athb-1 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 | homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 272 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][ISS]
    Biological Process: response to salt stress [IEP]
    regulation of transcription, DNA-dependent [ISS]
    positive regulation of transcription [IDA]
    response to blue light [IEP]
    leaf morphogenesis [IMP]
    Molecular Function: DNA binding [IDA]
    transcription factor activity [ISS]
    protein homodimerization activity [IDA]
    sequence-specific DNA binding [IDA]
    transcription activator activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF  60
   61 YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK KLGLQPRQVA VWFQNRRARW 120
  121 KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE 180
  181 PNQLDPVYIN AAAIKTEDRL SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH 240
  241 DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] PSI-BLAST 24.09691 Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA
    2 View Details [144..272] MSA 15.825997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle