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Protein Overview: FDFT_ARATH

General Information:
Name(s) found: FDFT_ARATH [Swiss-Prot]
Description(s) found:
Found 24 descriptions.
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  • Squalene synthase OS=Arabidopsis thaliana GN=SQS1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 410 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum membrane [TAS]
    endoplasmic reticulum [IDA]
    plasma membrane [IDA]
    Biological Process: sterol biosynthetic process [TAS]
    Molecular Function: farnesyl-diphosphate farnesyltransferase activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT  60
   61 ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH IYDTDWHYSC GTKEYKILMD 120
  121 QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL 180
  181 SKLFLAAGSE VLTPDWEAIS NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD 240
  241 KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA 300
  301 LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN 360
  361 RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL AIVFAYLRAN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..410] PSI-BLAST 82.30103 Squalene synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • prenyltransferase activity
    		•  5.34003736022396 bayes_pls_golite062009
  • farnesyl-diphosphate farnesyltransferase activity
    		•  5.04441642023356 bayes_pls_golite062009
  • geranyltranstransferase activity
    		•  3.86169009960142 bayes_pls_golite062009
  • farnesyltranstransferase activity
    		•  3.11591733497708 bayes_pls_golite062009
  • catalytic activity
    		•  2.4040324437254 bayes_pls_golite062009
  • dimethylallyltranstransferase activity
    		•  1.91559289231283 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  1.82540911622956 bayes_pls_golite062009
  • transferase activity
    		•  1.77738506203957 bayes_pls_golite062009
  • binding
    		•  0.0206192709356209 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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