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Protein Overview: COP1_ARATH

General Information:
Name(s) found: COP1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|95147316|gb|ABF57293.1| At2g32950 [Arabidopsis thaliana] [NCBI NR]
  • pir||T01112 photomorphogenesis repressor COP1 - Arabidopsis thaliana [NCBI NR]
  • gi|2702280|gb|AAB91983.1| COP1 regulatory protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20141387|sp|P43254.2|COP1_ARATH RecName: Full=E3 ubiquitin-protein ligase COP1; AltName: Full=Constitutive photomorphogenesis protein 1 [NCBI NR]
  • gi|15225760|ref|NP_180854.1| COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] [NCBI NR]
  • E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2 [Swiss-Prot]
  • (P43254) COP1 regulatory protein (Constitutive photomorphogenesis protein 1) [athaliana3702.FASTAC.txt]
  • COP1 regulatory protein [Arabidopsis thaliana]gi|20141387|sp|P43254|COP1_ARATH COP1 regulatory protein (Constitutive photomorphogenesis protein 1)gi|7446130|pir||T01112 photomorphogenesis repressor COP1 - Arabidopsis thalianagi|15225760|ref|NP_180854.1 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ubiquitin ligase protein COP1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATCOP1, DET340, FUS1, EMB168, COP1 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) | chr2:13985077-13990359 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Ubiquitin-protein ligase COP1 (Constitutive photomorphogenesis protein 1) [nr-271106-contam.fasta]
  • At2g32950 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • COP1 regulatory protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Transducin/WD40 repeat-like superfamily protein | chr2:13978000-13983282 FORWARD LENGTH=675 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 675 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][IMP]
    nuclear ubiquitin ligase complex [TAS]
    CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: photoperiodism, flowering [IMP]
    DNA repair [IMP]
    anthocyanin metabolic process [IMP]
    photomorphogenesis [IGI][TAS]
    regulation of stomatal movement [IGI][IMP]
    shade avoidance [IMP]
    skotomorphogenesis [TAS]
    Molecular Function: ubiquitin-protein ligase activity [IDA]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK  60
   61 DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP NFLLDKLLKK TSARHVSKTA 120
  121 SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD 180
  181 ELNEVQTDLQ YIKEDINAVE RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN 240
  241 SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA 300
  301 QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA 360
  361 EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF SSVVNEPADM QCPIVEMSTR 420
  421 SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV 480
  481 SGSDDCKVKV WCTRQEASVI NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ 540
  541 PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV 600
  601 NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML 660
  661 TANSQGTIKV LVLAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] PSI-BLAST 3.522879 No description for 2cklB was found.
    2 View Details [166..240] deduced N/A No confident structure predictions are available.
    3 View Details [241..675] PSI-BLAST 64.69897 F-box/WD-repeat protein 1 (beta-TRCP1)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle