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Protein Overview: COBRA_ARATH

General Information:
Name(s) found: COBRA_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|34222620|sp|Q94KT8.1|COBRA_ARATH RecName: Full=Protein COBRA; AltName: Full=Cell expansion protein; Flags: Precursor [NCBI NR]
  • gi|24796996|gb|AAN64510.1| At5g60920/MSL3_40 [Arabidopsis thaliana] [NCBI NR]
  • gi|20453072|gb|AAM19781.1| AT5g60920/MSL3_40 [Arabidopsis thaliana] [NCBI NR]
  • gi|18424412|ref|NP_568930.1| COB (COBRA) [Arabidopsis thaliana] [NCBI NR]
  • gi|14193657|gb|AAK56072.1|AF319663_1 putative glycosylphosphatidylinositol-anchored protein [Arabidopsis thaliana] [NCBI NR]
  • (Q94KT8) COBRA protein precursor (Cell expansion protein) [Swiss-Prot]
  • Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1 [Swiss-Prot]
  • AT5g60920/MSL3_40 [Arabidopsis thaliana]gi|14193657|gb|AAK56072.1| putative glycosylphosphatidylinositol-anchored protein [Arabidopsis thaliana]gi|18424412|ref|NP_568930.1| phytochelatin synthetase, putative / COBRA cell expansion protein COB, putative [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 COBRA protein precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: COB | COB (COBRA) | chr5:24528692-24531158 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Protein COBRA precursor (Cell expansion protein) [nr-271106-contam.fasta]
  • putative glycosylphosphatidylinositol-anchored protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • COB (COBRA) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g60920/MSL3_40 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT5g60920/MSL3_40 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: COB | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:24511466-24513932 REVERSE LENGTH=456 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 456 amino acids

    Gene Ontology:
    Cellular Component: external side of plasma membrane [ISS]
    longitudinal side of cell surface [IDA]
    plant-type cell wall [IDA]
    plasma membrane [IDA]
    anchored to membrane [TAS]
    anchored to plasma membrane [IDA]
    Biological Process: multidimensional cell growth [IMP]
    response to salt stress [IMP]
    cellulose microfibril organization [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY  60
   61 VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT TEQGDCSKYK GNIPHCCKKD 120
  121 PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT 180
  181 LMGPGPGYTC GPAKIVRPTK FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF 240
  241 YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI 300
  301 RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG 360
  361 LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT FEKGWAFPRR IYFNGDNCVM 420
  421 PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..229] Pfam 103.853872 No description for PF04833.6 was found. No confident structure predictions are available.
    2 View Details [230..324] deduced N/A No confident structure predictions are available.
    3 View Details [325..456] MSA 2.02295 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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