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Protein Overview: CLCA_ARATH

General Information:
Name(s) found: CLCA_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|41688456|sp|P92941.2|CLCA_ARATH RecName: Full=Chloride channel protein CLC-a; Short=AtCLC-a [NCBI NR]
  • gi|2935344|gb|AAC05742.1| anion channel protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T52107 anion channel protein CLC-a [validated] - Arabidopsis thaliana [NCBI NR]
  • gi|23297775|gb|AAN13022.1| anion channel protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15237514|ref|NP_198905.1| ATCLC-A (CHLORIDE CHANNEL A); anion channel/ nitrate transmembrane transporter/ voltage-gated chloride channel [Arabidopsis thaliana] [NCBI NR]
  • gi|10177968|dbj|BAB11351.1| anion channel protein [Arabidopsis thaliana] [NCBI NR]
  • Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2 [Swiss-Prot]
  • (P92941) Chloride channel protein CLC-a (AtCLC-a) [athaliana3702.FASTAC.txt]
  • anion channel protein [Arabidopsis thaliana]gi|10177968|dbj|BAB11351.1| anion channel protein [Arabidopsis thaliana]gi|41688456|sp|P92941|CLCA_ARATH Chloride channel protein CLC-a (AtCLC-a)gi|2935344|gb|AAC05742.1| anion channel protein [Arabidopsis th [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Chloride channel protein CLC-a [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CLC-A, CLCA, ATCLC-A | ATCLC-A (CHLORIDE CHANNEL A); anion channel/ voltage-gated chloride channel | chr5:16398873-16402227 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Chloride channel protein CLC-a (AtCLC-a) [nr-271106-contam.fasta]
  • anion channel protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATCLC-A (CHLORIDE CHANNEL A); anion channel/ voltage-gated chloride channel [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATCLC-A, CLC-A, CLCA, ATCLCA | chloride channel A | chr5:16381645-16384999 REVERSE LENGTH=775 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 775 amino acids

    Gene Ontology:
    Cellular Component: intracellular [TAS]
    Biological Process: nitrate transport [IDA]
    response to nitrate [IMP]
    chloride transport [IDA][ISS]
    Molecular Function: nitrate transmembrane transporter activity [IDA]
    anion channel activity [ISS]
    voltage-gated chloride channel activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEDGNLQIS NSNYNGEEEG EDPENNTLNQ PLLKRHRTLS STPLALVGAK VSHIESLDYE  60
   61 INENDLFKHD WRSRSKAQVF QYIFLKWTLA CLVGLFTGLI ATLINLAVEN IAGYKLLAVG 120
  121 YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF 180
  181 TTMMVKIVGS IGAVAAGLDL GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD 240
  241 RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI 300
  301 CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN 360
  361 LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS IDEICPTNGR SGNFKQFNCP 420
  421 NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF 480
  481 LPIILMGSAY GRMLGTAMGS YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL 540
  541 LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV 600
  601 TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR 660
  661 RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH PLTNTTPYTV VQSMSVAKAL 720
  721 VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..73] deduced N/A No confident structure predictions are available.
    2 View Details [74..573] PSI-BLAST 57.69897 Clc chloride channel
    3 View Details [574..775] PSI-BLAST 18.0 Crystal structure of Inosine-5'-monophosphate dehydrogenase (TM1347) from THERMOTOGA MARITIMA at 2.18 A resolution


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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