YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCA_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.98
Transmembrane Helix	83	104	0.94
Non-Cytoplasmic	105	131	0.87
Transmembrane Helix	132	156	0.85
Cytoplasmic	157	176	0.83
Transmembrane Helix	177	198	0.88
Non-Cytoplasmic	199	204	0.83
Transmembrane Helix	205	223	0.89
Cytoplasmic	224	243	0.90
Transmembrane Helix	244	267	0.82
Non-Cytoplasmic	268	277	0.80
Transmembrane Helix	278	298	0.91
Cytoplasmic	299	305	0.72
Transmembrane Helix	306	322	0.88
Non-Cytoplasmic	323	330	0.72
Transmembrane Helix	331	352	0.93
Cytoplasmic	353	370	0.93
Transmembrane Helix	371	392	0.91
Non-Cytoplasmic	393	452	0.94
Transmembrane Helix	453	474	0.85
Cytoplasmic	475	477	0.56
Transmembrane Helix	478	499	0.69
Non-Cytoplasmic	500	506	0.51
Transmembrane Helix	507	532	0.73
Cytoplasmic	533	534	0.48
Transmembrane Helix	535	556	0.73
Non-Cytoplasmic	557	775	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEDGNLQIS NSNYNGEEEG EDPENNTLNQ PLLKRHRTLS STPLALVGAK VSHIESLDYE  60
   61 INENDLFKHD WRSRSKAQVF QYIFLKWTLA CLVGLFTGLI ATLINLAVEN IAGYKLLAVG 120
  121 YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF 180
  181 TTMMVKIVGS IGAVAAGLDL GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD 240
  241 RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI 300
  301 CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN 360
  361 LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS IDEICPTNGR SGNFKQFNCP 420
  421 NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF 480
  481 LPIILMGSAY GRMLGTAMGS YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL 540
  541 LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV 600
  601 TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR 660
  661 RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH PLTNTTPYTV VQSMSVAKAL 720
  721 VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR