YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: AGL6_ARATH

General Information:
Name(s) found: AGL6_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|91806361|gb|ABE65908.1| MADS-box protein [Arabidopsis thaliana] [NCBI NR]
  • pir||F39534 floral homeotic protein AGL6 - Arabidopsis thaliana [NCBI NR]
  • gi|2979564|gb|AAC06173.1| MADS-box protein (AGL6) [Arabidopsis thaliana] [NCBI NR]
  • gi|15225532|ref|NP_182089.1| AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|1351899|sp|P29386.2|AGL6_ARATH RecName: Full=Agamous-like MADS-box protein AGL6 [NCBI NR]
  • gi|1019925|gb|AAA79328.1| transcription factor [NCBI NR]
  • Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2 [Swiss-Prot]
  • (P29386) Agamous-like MADS box protein AGL6 [athaliana3702.FASTAC.txt]
  • MADS-box protein (AGL6) [Arabidopsis thaliana]gi|1351899|sp|P29386|AGL6_ARATH Agamous-like MADS box protein AGL6gi|81614|pir||F39534 floral homeotic protein AGL6 - Arabidopsis thalianagi|15225532|ref|NP_182089.1| MADS-box protein (AGL6) [Arabidopsis th [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Agamous-like MADS box protein AGL6 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AGL6 | AGL6 (AGAMOUS LIKE-6); DNA binding / transcription factor | chr2:18811527-18813365 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AGL6; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MADS-box protein (AGL6) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription factor [nr-271106-contam.fasta]
  • Agamous-like MADS-box protein AGL6 [nr-271106-contam.fasta]
  • MADS-box protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AGL6 | AGAMOUS-like 6 | chr2:18804453-18806291 FORWARD LENGTH=252 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 252 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: floral organ development [IMP]
    vegetative to reproductive phase transition of meristem [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV  60
   61 GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY ESLVRTNRNL LGEDLGEMGV 120
  121 KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF 180
  181 QDLWANSAAS VAGDPNNSEF PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV 240
  241 AGETNFVQGW VL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] PSI-BLAST 21.522879 Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
    2 View Details [82..175] Pfam 31.387216 No description for PF01486.8 was found. No confident structure predictions are available.
    3 View Details [176..252] MSA 1.387996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.47820295830817 bayes_pls_golite062009
  • DNA binding
    		•  4.34885522982729 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.22473647889076 bayes_pls_golite062009
  • binding
    		•  3.73009730829487 bayes_pls_golite062009
  • transcription factor activity
    		•  3.68208249443337 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.65616273505159 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.72567983955215 bayes_pls_golite062009
  • transcription activator activity
    		•  1.38059870614713 bayes_pls_golite062009
  • protein binding
    		•  1.27646601063623 bayes_pls_golite062009
  • DNA bending activity
    		•  0.167327205417291 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle