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Protein Overview: 4CL1_ARATH

General Information:
Name(s) found: 4CL1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|609340|gb|AAA82888.1| 4-coumarate--coenzyme A ligase [Arabidopsis thaliana] [NCBI NR]
  • gi|5702184|gb|AAD47191.1|AF106084_1 4-coumarate:CoA ligase 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|36312821|gb|AAQ86588.1| 4-coumarate CoA ligase isoform 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|20466562|gb|AAM20598.1| 4-coumarate:CoA ligase 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|15218002|ref|NP_175579.1| 4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase [Arabidopsis thaliana] [NCBI NR]
  • pir||S57784 4-coumarate-CoA ligase (EC 6.2.1.12) 4CL - Arabidopsis thaliana [NCBI NR]
  • gi|12321679|gb|AAG50881.1|AC025294_19 4-coumarate:CoA ligase 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|12229649|sp|Q42524.1|4CL1_ARATH RecName: Full=4-coumarate--CoA ligase 1; Short=4CL 1; AltName: Full=4-coumarate--CoA ligase isoform 1; Short=At4CL1; AltName: Full=4-coumaroyl-CoA synthase 1 [NCBI NR]
  • 4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1 [Swiss-Prot]
  • (Q42524) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) [athaliana3702.FASTAC.txt]
  • 4-coumarate CoA ligase isoform 1 [Arabidopsis thaliana]gi|20466562|gb|AAM20598.1| 4-coumarate:CoA ligase 1 [Arabidopsis thaliana]gi|609340|gb|AAA82888.1| 4-coumarate--coenzyme A ligase [Arabidopsis thaliana]gi|12229649|sp|Q42524|4CL1_ARATH 4-coumarate- [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Splice Isoform 1 of 4-coumarate--CoA ligase 1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: 4CL.1, AT4CL1, 4CL1 | 4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase | chr1:19162675-19165132 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • 4-coumarate CoA ligase isoform 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 4-coumarate--CoA ligase 1 (4CL 1) (At4CL1) (4-coumaroyl-CoA synthase 1) [nr-271106-contam.fasta]
  • 4-coumarate--coenzyme A ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 4-coumarate:CoA ligase 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA ligase 1 | chr1:19159007-19161464 REVERSE LENGTH=561 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 561 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: response to wounding [IEP]
    phenylpropanoid metabolic process [TAS]
    response to UV [IEP]
    response to fungus [IEP]
    Molecular Function: 4-coumarate-CoA ligase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPQEQAVSQ VMEKQSNNNN SDVIFRSKLP DIYIPNHLSL HDYIFQNISE FATKPCLING  60
   61 PTGHVYTYSD VHVISRQIAA NFHKLGVNQN DVVMLLLPNC PEFVLSFLAA SFRGATATAA 120
  121 NPFFTPAEIA KQAKASNTKL IITEARYVDK IKPLQNDDGV VIVCIDDNES VPIPEGCLRF 180
  181 TELTQSTTEA SEVIDSVEIS PDDVVALPYS SGTTGLPKGV MLTHKGLVTS VAQQVDGENP 240
  241 NLYFHSDDVI LCVLPMFHIY ALNSIMLCGL RVGAAILIMP KFEINLLLEL IQRCKVTVAP 300
  301 MVPPIVLAIA KSSETEKYDL SSIRVVKSGA APLGKELEDA VNAKFPNAKL GQGYGMTEAG 360
  361 PVLAMSLGFA KEPFPVKSGA CGTVVRNAEM KIVDPDTGDS LSRNQPGEIC IRGHQIMKGY 420
  421 LNNPAATAET IDKDGWLHTG DIGLIDDDDE LFIVDRLKEL IKYKGFQVAP AELEALLIGH 480
  481 PDITDVAVVA MKEEAAGEVP VAFVVKSKDS ELSEDDVKQF VSKQVVFYKR INKVFFTESI 540
  541 PKAPSGKILR KDLRAKLANG L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..561] PSI-BLAST 111.0 FIREFLY LUCIFERASE IN COMPLEX WITH BROMOFORM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-sulfur bonds
    		•  5.10123876514454 bayes_pls_golite062009
  • fatty acid ligase activity
    		•  4.83067429373059 bayes_pls_golite062009
  • long-chain fatty acid-CoA ligase activity
    		•  4.72692389032116 bayes_pls_golite062009
  • acetate-CoA ligase activity
    		•  4.48129067128523 bayes_pls_golite062009
  • acid-thiol ligase activity
    		•  4.28278725989432 bayes_pls_golite062009
  • CoA-ligase activity
    		•  4.12850865352867 bayes_pls_golite062009
  • oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)
    		•  2.74744781333102 bayes_pls_golite062009
  • Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity
    		•  2.74744781333102 bayes_pls_golite062009
  • luciferin monooxygenase activity
    		•  2.67396462766343 bayes_pls_golite062009
  • ligase activity
    		•  2.49556073715112 bayes_pls_golite062009
  • catalytic activity
    		•  1.83545185797733 bayes_pls_golite062009
  • acetoacetate-CoA ligase activity
    		•  1.03788694975627 bayes_pls_golite062009
  • binding
    		•  0.903437109563498 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  0.464663038956639 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle