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Protein Overview: LICR_BACSU

General Information:
Name(s) found: LICR_BACSU [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Probable licABCH operon regulator OS=Bacillus subtilis GN=licR PE=1 SV=1 [Swiss-Prot]
    • Organism: Bacillus subtilis
    Length: 641 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHGRLRDIL RLLMAAEAPV TSSFFAAQLN VTTRTVRNDI KELQGVLSGH GAFVQSVRGS  60
   61 GYKLRIDDEQ VFRTLLQDEF QQKKGLPVLP EERMAYLMKR LLLADHYLKL DELAEELFIS 120
  121 KSTLQTDLKE VKKRLLPYRI VMETRPNYGF KLRGDEVQMR YCMAEYIVDE RETEIDVLNE 180
  181 KADILPKEEI EIIRSAILKK MKNDRIPLSN MGLNNLIIHI AIACKRIRTE NYVSLFPKDM 240
  241 DHILHQKEYQ AAEAIVKELE SKLSVTFPKD ETAYITMHLL GTKRMTQSQC GEDTFSIEEE 300
  301 TDQLTLAMIK AVDRELKLGI LHDKELKIGL ALHMKPAISR NRYGMNLRNP MLAAIKEHYP 360
  361 LAFEAGIIAG IVIKEQTGIE IHENEIGYLA LHFGAAIERK KTESPPKRCI IVCASGAGSA 420
  421 QLLREKLRSH FGKRLDILGT AEYYSLDQMS YESIDFVIST IPIKKELPVP VLKVNTILGG 480
  481 TDFTKIESIL SDEKEKANRY LKKELVFFQE DLRSKEEVIQ FLGQKVVECG FADEEIIDSI 540
  541 FEREDMSPTC FGNLVAIPHP LVPQTKTTFW AVCTLKKPID WESQRVQFVC LLCVEKENKA 600
  601 DLQSMYKLLG SILDDPAAMN QLIKCRSYQE LSDVFDQKML S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] FFAS03 2.02 Putative transcriptional regulator TM1602, N-terminal domain; Putative transcriptional regulator TM1602, C-terminal domain
    2 View Details [148..402] PSI-BLAST 33.30103 Structure of the native and inactive LicT PRD from B. subtilis
    3 View Details [403..496] FFAS03 3.2 NMR structure of enzyme GatB of the galactitol-specific phosphoenolpyruvate-dependent phosphotransferase system
    4 View Details [497..641] PSI-BLAST 24.045757 Nitrogen regulatory bacterial protein IIa-ntr

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.67519658226073 bayes_pls_golite062009
  • DNA binding
    		•  3.1229077545522 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.10431747895367 bayes_pls_golite062009
  • transcription factor activity
    		•  2.49694475728018 bayes_pls_golite062009
  • binding
    		•  2.03697617454396 bayes_pls_golite062009
  • transcription activator activity
    		•  0.293284204935948 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.266645609122554 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.259857063944388 bayes_pls_golite062009
  • protein binding
    		•  0.00796693091603284 bayes_pls_golite062009
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  2.56369131794526 bayes_pls_golite062009
  • transcription antiterminator activity
    		•  1.04498481068613 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • transcription regulator activity
    		•  0.789390286938302 bayes_pls_golite062009
  • catalytic activity
    		•  0.547925219495929 bayes_pls_golite062009
  • binding
    		•  0.396676636991646 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle