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Protein Overview: ret-1

General Information:
Name(s) found: ret-1 / CE35913 [WormBase]
Description(s) found:
Found 15 descriptions.
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  • WBGene00004336 locus:ret-1 Reticulon-like protein status:Confirmed UniProt:Q7JLB1 protein_id:CAE48544.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 570 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum [IEALink to PubMed article]
    proteinaceous extracellular matrix [IEALink to PubMed article]
    Biological Process: cell adhesion [IEALink to PubMed article]
    blood coagulation [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPSDLSPN APPVGFENTA QFLEKLQQED RPSAEGSIDS SGFEKVDHEG LDEFAAPPVH  60
   61 DPMQKSVFGS LGSDDMMSSH HNDVIEKNYF NDNAPTAALL ESPIAEEARK LVQDAVESAS 120
  121 EYKKQAVDSG DEIGRELLDN VEQKIEQVKE PIVDSLHKAY DGVGDFVHET VPNAVDDFVR 180
  181 EAEKQLPESP VPEKIETPEP LVDIHDTVDK VHDEVDNFLR REPTPPFETD DVAPLSDDKP 240
  241 QFGNQTPEED ETTFDRKGPL TIPEEVEKAA AAQNNDLDDF DPLVTSNTGA AFGAAVGAAA 300
  301 AVESLTEEEM FGHQKFETVP RPPTPPKDIS DEDVKPSTVN LGPSHHHSHP SSPHHSILKH 360
  361 HGDAWIDFKT VPPCVLDVIY WRDAKKSAIV LSLALLVLFV LAKYPLLTVV TYSLLLALGA 420
  421 AAGFRVFKKV EAQIKKTDSE HPFSEILAQD LTLPQEKVHA QADVFVEHAT CIANKLKKLV 480
  481 FVESPLESIK FGLVLWSLTY IASWFSGFTL AILGLLGVFS VPKVYESNQE AIDPHLATIS 540
  541 GHLKNVQNII DEKLPFLRSA PVAAEEKKDQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..77] deduced N/A No confident structure predictions are available.
    2 View Details [78..256] MSA 2.180995 View MSA. No confident structure predictions are available.
    3 View Details [257..380] deduced N/A No confident structure predictions are available.
    4 View Details [381..570] PSI-BLAST 22.39794 No description for 2g31A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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