YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ret-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPSDLSPN APPVGFENTA QFLEKLQQED RPSAEGSIDS SGFEKVDHEG LDEFAAPPVH  60
   61 DPMQKSVFGS LGSDDMMSSH HNDVIEKNYF NDNAPTAALL ESPIAEEARK LVQDAVESAS 120
  121 EYKKQAVDSG DEIGRELLDN VEQKIEQVKE PIVDSLHKAY DGVGDFVHET VPNAVDDFVR 180
  181 EAEKQLPESP VPEKIETPEP LVDIHDTVDK VHDEVDNFLR REPTPPFETD DVAPLSDDKP 240
  241 QFGNQTPEED ETTFDRKGPL TIPEEVEKAA AAQNNDLDDF DPLVTSNTGA AFGAAVGAAA 300
  301 AVESLTEEEM FGHQKFETVP RPPTPPKDIS DEDVKPSTVN LGPSHHHSHP SSPHHSILKH 360
  361 HGDAWIDFKT VPPCVLDVIY WRDAKKSAIV LSLALLVLFV LAKYPLLTVV TYSLLLALGA 420
  421 AAGFRVFKKV EAQIKKTDSE HPFSEILAQD LTLPQEKVHA QADVFVEHAT CIANKLKKLV 480
  481 FVESPLESIK FGLVLWSLTY IASWFSGFTL AILGLLGVFS VPKVYESNQE AIDPHLATIS 540
  541 GHLKNVQNII DEKLPFLRSA PVAAEEKKDQ

Type	Start	End	Confidence
Cytoplasmic	1	387	0.61
Transmembrane Helix	388	407	0.65
Non-Cytoplasmic	408	408	0.41
Transmembrane Helix	409	427	0.71
Cytoplasmic	428	495	0.72
Transmembrane Helix	496	519	0.85
Non-Cytoplasmic	520	570	0.72