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Protein Overview: gbh-2

General Information:
Name(s) found: gbh-2 / CE35896 [WormBase]
Description(s) found:
Found 15 descriptions.
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  • WBGene00001523 locus:gbh-2 status:Partially_confirmed UniProt:Q21526 protein_id:CAA91416.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 409 amino acids

    Gene Ontology:
    Cellular Component: cell [IDA]
    mitochondrion [TAS]
    Biological Process: electron transport [IEALink to PubMed article]
    carnitine biosynthetic process [IEALink to PubMed article][ISS]
    Molecular Function: L-ascorbic acid binding [IEALink to PubMed article]
    trimethyllysine dioxygenase activity [IEALink to PubMed article]
    oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [ISS]
    oxidoreductase activity [IEALink to PubMed article]
    iron ion binding [IEALink to PubMed article]
    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVQRRLVSG FTWVTGWNLK NIRSKNDCLE IRYENEGNPS KLIMPFVWLR DHCTSQKLYH  60
   61 LPTNQRKSNC CDITSLSKIK HSNQVIIDEA TNSLQIVWID GHQSKFKIGN IIREGKVEKN 120
  121 VSNDNKIYEL WNSKSLKDVP RISKSTLSLQ SFSKNLVKYG VIIVDGVEGT SEATEKLCQS 180
  181 LVPVHDTFFG QFWVFSNSAT NDEPAYEDTA YGSDEIGPHT DGTYFDQTPG IQVFHCLTPA 240
  241 KTGGDTVLVD SFYCAEKLRN ESPEDFEILC NTKISHHYLE GSPPGSSIHS VSLEKPVIER 300
  301 NSFGNITQIR FNPYDRAPFS CLNSSEASAA ETIKFYEAYE KFSKICHNPD NSIEISLRPG 360
  361 SVIFIDNFRI LHSRTSFQGY RQMCGCYLSR DNFMAKAIPF LSGKSQTSL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] MSA 6.206996 View MSA. No confident structure predictions are available.
    2 View Details [120..409] PSI-BLAST 54.522879 Taurine/alpha-ketoglutarate dioxygenase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • damaged DNA binding
    		•  2.1600632791412 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.14660717798066 bayes_pls_golite062009
  • oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
    		•  1.96457406152694 bayes_pls_golite062009
  • binding
    		•  0.997838210709106 bayes_pls_golite062009
  • catalytic activity
    		•  0.921320409505 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.195303464765705 bayes_pls_golite062009
  • DNA binding
    		•  0.119653205743915 bayes_pls_golite062009
  • protein binding
    		•  0.0481711987500598 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle