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View Structure Prediction Details

Protein: gbh-2
Organism: Caenorhabditis elegans
Length: 409 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gbh-2.

Description E-value Query
Range
Subject
Range
gi|109132916 - gi|109132916|ref|XP_001099674.1| PREDICTED: trimethyllysine hydroxylase, epsilon isoform 3 [Macaca m...
299.0 [0..2] [400..26]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVQRRLVSG FTWVTGWNLK NIRSKNDCLE IRYENEGNPS KLIMPFVWLR DHCTSQKLYH  60
   61 LPTNQRKSNC CDITSLSKIK HSNQVIIDEA TNSLQIVWID GHQSKFKIGN IIREGKVEK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVSNDNKIYE LWNSKSLKDV PRISKSTLSL QSFSKNLVKY GVIIVDGVEG TSEATEKLCQ  60
   61 SLVPVHDTFF GQFWVFSNSA TNDEPAYEDT AYGSDEIGPH TDGTYFDQTP GIQVFHCLTP 120
  121 AKTGGDTVLV DSFYCAEKLR NESPEDFEIL CNTKISHHYL EGSPPGSSIH SVSLEKPVIE 180
  181 RNSFGNITQI RFNPYDRAPF SCLNSSEASA AETIKFYEAY EKFSKICHNP DNSIEISLRP 240
  241 GSVIFIDNFR ILHSRTSFQG YRQMCGCYLS RDNFMAKAIP FLSGKSQTSL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.522879
Match: 1gqwA
Description: Taurine/alpha-ketoglutarate dioxygenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
damaged DNA binding 2.1600632791412 bayes_pls_golite062009
oxidoreductase activity 2.14660717798066 bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors 1.96457406152694 bayes_pls_golite062009
binding 0.997838210709106 bayes_pls_golite062009
catalytic activity 0.921320409505 bayes_pls_golite062009
nucleic acid binding 0.195303464765705 bayes_pls_golite062009
DNA binding 0.119653205743915 bayes_pls_golite062009
protein binding 0.0481711987500598 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle