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Protein Overview: lgc-42

General Information:
Name(s) found: lgc-42 / CE35080 [WormBase]
Description(s) found:
Found 13 descriptions.
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  • WBGene00021437 locus:lgc-42 ion channel status:Partially_confirmed UniProt:Q9N517 protein_id:AAF60513.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 382 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter receptor activity [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRNGNPKAP LQVHFGFYVE SLGNFRATEM TYDMDMYLYM SWQDDSMRHN ETEHVLVNDK  60
   61 DILDKIWLPD LYFANARTAY FHKVTVHNFN MFISPQGTIS YGTRVTLNLA CNLDLKDYPL 120
  121 DYQTCYIKVI SYAHVKNEMN VSWFPNDPIR FNPEIDLPEF HIRALDKDYC NGVFLYTLTH 180
  181 NSSRVGEFSC LLGMLKLKRA IGFHLVQSYI PTGLIVAISW VSFWIDRRAV PARVSLSFTT 240
  241 LLTLSTQGNG IRYALPAVSY AKAIDYFYGV CMLFIFGVLL EFAAVNSYMR RANKYNHMAE 300
  301 KIQSAYGGKP IIADYDSDYE EGPTKYYGNL NKNSAHLMYK ALKFSRKALS IDKAARFAFP 360
  361 CVFAIFNVFY WLYYLREPPL MD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..319] PSI-BLAST 61.522879 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.
    2 View Details [320..382] FFAS03 1.41 Acetylcholine receptor protein, delta chain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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