| Protein: | lgc-42 |
| Organism: | Caenorhabditis elegans |
| Length: | 382 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgc-42.
| Description | E-value | Query Range |
Subject Range |
|
|
327.0 | [0..1] | [381..286] |
|
Region A: Residues: [1-319] |
1 11 21 31 41 51
| | | | | |
1 MPRNGNPKAP LQVHFGFYVE SLGNFRATEM TYDMDMYLYM SWQDDSMRHN ETEHVLVNDK 60
61 DILDKIWLPD LYFANARTAY FHKVTVHNFN MFISPQGTIS YGTRVTLNLA CNLDLKDYPL 120
121 DYQTCYIKVI SYAHVKNEMN VSWFPNDPIR FNPEIDLPEF HIRALDKDYC NGVFLYTLTH 180
181 NSSRVGEFSC LLGMLKLKRA IGFHLVQSYI PTGLIVAISW VSFWIDRRAV PARVSLSFTT 240
241 LLTLSTQGNG IRYALPAVSY AKAIDYFYGV CMLFIFGVLL EFAAVNSYMR RANKYNHMAE 300
301 KIQSAYGGKP IIADYDSDY
|
| Detection Method: |  |
| Confidence: | 61.522879 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [320-382] |
1 11 21 31 41 51
| | | | | |
1 EEGPTKYYGN LNKNSAHLMY KALKFSRKAL SIDKAARFAF PCVFAIFNVF YWLYYLREPP 60
61 LMD
|
| Detection Method: | |
| Confidence: | 1.41 |
| Match: | 1oedC |
| Description: | Acetylcholine receptor protein, delta chain |
Matching Structure (courtesy of the PDB): |
|
