YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-42
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRNGNPKAP LQVHFGFYVE SLGNFRATEM TYDMDMYLYM SWQDDSMRHN ETEHVLVNDK  60
   61 DILDKIWLPD LYFANARTAY FHKVTVHNFN MFISPQGTIS YGTRVTLNLA CNLDLKDYPL 120
  121 DYQTCYIKVI SYAHVKNEMN VSWFPNDPIR FNPEIDLPEF HIRALDKDYC NGVFLYTLTH 180
  181 NSSRVGEFSC LLGMLKLKRA IGFHLVQSYI PTGLIVAISW VSFWIDRRAV PARVSLSFTT 240
  241 LLTLSTQGNG IRYALPAVSY AKAIDYFYGV CMLFIFGVLL EFAAVNSYMR RANKYNHMAE 300
  301 KIQSAYGGKP IIADYDSDYE EGPTKYYGNL NKNSAHLMYK ALKFSRKALS IDKAARFAFP 360
  361 CVFAIFNVFY WLYYLREPPL MD

Type	Start	End	Confidence
Cytoplasmic	1	200	0.62
Transmembrane Helix	201	224	0.84
Non-Cytoplasmic	225	265	0.64
Transmembrane Helix	266	285	0.95
Cytoplasmic	286	353	0.95
Transmembrane Helix	354	374	0.93
Non-Cytoplasmic	375	382	0.92