YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: lgc-43

General Information:
Name(s) found: lgc-43 / CE34749 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00008076 locus:lgc-43 status:Partially_confirmed UniProt:Q7YTP9 protein_id:CAE17770.1 [WormBase]
  • gi|71984513|ref|NP_001023062.1| Ligand-Gated ion Channel family member (lgc-43) [Caenorhabditis elegans] [NCBI NR]
  • gi|33300110|emb|CAE17770.1| C. elegans protein C43F9.9, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep111.fasta]
  • Hypothetical protein C43F9.9 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE34749 WBGene00008076 status:Partially_confirmed TR:Q7YTP9 protein_id:CAE17770.1 [wormpep150.fasta]
  • 34749 WBGene00008076 status:Partially_confirmed TR:Q7YTP9 protein_id:CAE17770.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • status:Predicted TR:Q7YTP9 protein_id:CAE17770.1 [wormpep115.fasta.reversed]
  • CE34749 WBGene00008076 locus:lgc-43 status:Partially_confirmed UniProt:Q7YTP9_CAEEL protein_id:CAE17770.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE34749 WBGene00008076 locus:lgc-43 status:Partially_confirmed UniProt:Q7YTP9_CAEEL protein_id:CAE17770.1| [wormORF-contam.fasta]
  • C43F9.9 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE34749 WBGene00008076 locus:lgc-43 status:Partially_confirmed UniProt:Q7YTP9 protein_id:CAE17770.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • Ligand-Gated ion Channel OS=Caenorhabditis elegans GN=lgc-43 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 679 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIRCSLSII CILLSLSVIR IDANEVLTTE ASTDSSSPTS SIFDWIPFKL FGSEKTTPIL  60
   61 RIKVRAVNRV IYTKKDNLLQ EIENASEYKK EQEKQFEQIP DVSTEVKEVS INEPDKMYER 120
  121 GEEPKIFLFP KQGNTVPKIE GEFEKVDIIG EVSEDKVKTP KDDDFQIMYD DELKEYVLKR 180
  181 RPLKMDKNGI IDSWNGGDTK EIMDDSDDEV KRILESGEEG LVGKNNRTLK TQQRNHTEVT 240
  241 LEEEEINLED LQFKSYQFKP GKSKIRTYDL AWMDPSFLEK EEFSVRLTSQ QRSDWRDKLT 300
  301 NLTMLEERRA NEHRDYGSSY ILPVLKSVDY DNTSVPLAFN DIPVNVAVAF NFLYLANFDS 360
  361 EMMEFSMDVE MEFSWIDIRL VNNYTKPIRI REKPIIEQIW RPDPYIVNSK HSYFHYVSFP 420
  421 NIRMRITPEG LVTYTVRVSS VCSCFMSFCL YPHDRQECDL RISSIAYSNQ YVKFHWHSNP 480
  481 IKFQSKITLP ELHITKIKTA ECSTKGKLVD ASCLRIIFSL ERDSARFVIE KYVPSTLAMM 540
  541 FAWVAPYVPY NYEDVRIITP ITVLLTLVQM EKGDKEIRTS YLTSIDVWFA AMKSFTVLSL 600
  601 LESLAVLALI KRSRAMTKNA ERAANEFERC TFEAEAYRLN RLYHRVDSIC RFSSPVVFVA 660
  661 FFVYYVLFVA QGNENCVQI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] deduced N/A No confident structure predictions are available.
    2 View Details [142..215] MSA 1.005983 View MSA. No confident structure predictions are available.
    3 View Details [216..312] deduced N/A No confident structure predictions are available.
    4 View Details [313..679] PSI-BLAST 73.522879 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle