| Protein: | lgc-43 |
| Organism: | Caenorhabditis elegans |
| Length: | 679 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgc-43.
| Description | E-value | Query Range |
Subject Range |
|
|
586.0 | [0..1] | [658..1] |
|
Region A: Residues: [1-141] |
1 11 21 31 41 51
| | | | | |
1 MMIRCSLSII CILLSLSVIR IDANEVLTTE ASTDSSSPTS SIFDWIPFKL FGSEKTTPIL 60
61 RIKVRAVNRV IYTKKDNLLQ EIENASEYKK EQEKQFEQIP DVSTEVKEVS INEPDKMYER 120
121 GEEPKIFLFP KQGNTVPKIE G
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [142-215] |
1 11 21 31 41 51
| | | | | |
1 EFEKVDIIGE VSEDKVKTPK DDDFQIMYDD ELKEYVLKRR PLKMDKNGII DSWNGGDTKE 60
61 IMDDSDDEVK RILE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [216-312] |
1 11 21 31 41 51
| | | | | |
1 SGEEGLVGKN NRTLKTQQRN HTEVTLEEEE INLEDLQFKS YQFKPGKSKI RTYDLAWMDP 60
61 SFLEKEEFSV RLTSQQRSDW RDKLTNLTML EERRANE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [313-679] |
1 11 21 31 41 51
| | | | | |
1 HRDYGSSYIL PVLKSVDYDN TSVPLAFNDI PVNVAVAFNF LYLANFDSEM MEFSMDVEME 60
61 FSWIDIRLVN NYTKPIRIRE KPIIEQIWRP DPYIVNSKHS YFHYVSFPNI RMRITPEGLV 120
121 TYTVRVSSVC SCFMSFCLYP HDRQECDLRI SSIAYSNQYV KFHWHSNPIK FQSKITLPEL 180
181 HITKIKTAEC STKGKLVDAS CLRIIFSLER DSARFVIEKY VPSTLAMMFA WVAPYVPYNY 240
241 EDVRIITPIT VLLTLVQMEK GDKEIRTSYL TSIDVWFAAM KSFTVLSLLE SLAVLALIKR 300
301 SRAMTKNAER AANEFERCTF EAEAYRLNRL YHRVDSICRF SSPVVFVAFF VYYVLFVAQG 360
361 NENCVQI
|
| Detection Method: | |
| Confidence: | 73.522879 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
