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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lgc-43
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIRCSLSII CILLSLSVIR IDANEVLTTE ASTDSSSPTS SIFDWIPFKL FGSEKTTPIL  60
   61 RIKVRAVNRV IYTKKDNLLQ EIENASEYKK EQEKQFEQIP DVSTEVKEVS INEPDKMYER 120
  121 GEEPKIFLFP KQGNTVPKIE GEFEKVDIIG EVSEDKVKTP KDDDFQIMYD DELKEYVLKR 180
  181 RPLKMDKNGI IDSWNGGDTK EIMDDSDDEV KRILESGEEG LVGKNNRTLK TQQRNHTEVT 240
  241 LEEEEINLED LQFKSYQFKP GKSKIRTYDL AWMDPSFLEK EEFSVRLTSQ QRSDWRDKLT 300
  301 NLTMLEERRA NEHRDYGSSY ILPVLKSVDY DNTSVPLAFN DIPVNVAVAF NFLYLANFDS 360
  361 EMMEFSMDVE MEFSWIDIRL VNNYTKPIRI REKPIIEQIW RPDPYIVNSK HSYFHYVSFP 420
  421 NIRMRITPEG LVTYTVRVSS VCSCFMSFCL YPHDRQECDL RISSIAYSNQ YVKFHWHSNP 480
  481 IKFQSKITLP ELHITKIKTA ECSTKGKLVD ASCLRIIFSL ERDSARFVIE KYVPSTLAMM 540
  541 FAWVAPYVPY NYEDVRIITP ITVLLTLVQM EKGDKEIRTS YLTSIDVWFA AMKSFTVLSL 600
  601 LESLAVLALI KRSRAMTKNA ERAANEFERC TFEAEAYRLN RLYHRVDSIC RFSSPVVFVA 660
  661 FFVYYVLFVA QGNENCVQI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle