YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE34664

General Information:
Name(s) found: CE34664 [WormBase]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • WBGene00015571 LDL-receptor domain protein status:Confirmed UniProt:Q17797 protein_id:CCD61392.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 635 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: nematode larval development [IMP]
    autophagy [IMP]
    molting cycle, collagen and cuticulin-based cuticle [IMP]
    Molecular Function: sugar binding [IEALink to PubMed article]
    scavenger receptor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTILFFGIF FIFIFQCAKC IELKIFEDLL EVRSQSGLFF PLCSKSFHQK YGEQACASIS  60
   61 STFLSYSTVS LQQYTYSVGC TTSVCFTFLS SFCKTGVKVF CSPSLCASGT LQIGSKCLSI 120
  121 STVPVQGYSE ANYYCNPATL ISSLKPTEIE SIRDTILPTF ADTRLFLTSG LRQGATWKWG 180
  181 NGDTVEQEVT GTGRCLALQA GNLVAIDCDS EAYVFCESGR ECIARDKEYS GTANRTSDGK 240
  241 MCLMWNDPTV LFRRERDLEI LNHNFCRFVN DADGKKSATP VCYTKPNELS QCYIPPCPES 300
  301 FNDVVPIESG DSCPIGSISC DNGSKCISEK FQCDYEVDCN DGSDEHNCED YLQYYELIGA 360
  361 YRLADNIIEV WTFIPHVQGC ARKCRESLLM CEAFSYEPKS QTCLLTDTSQ TFSSLARKIT 420
  421 SLYYRRRFST KDVEFQVENK VLYATKSAKK GHVCDDNYSR EKLSSICRVL GFGDPIYTVE 480
  481 SHQSESSLGP LQPTTLHPTN PSFDSPSSVS QMRRTSPSAT LAPRLPAWNL SCLREPNCTS 540
  541 TVISTCEPIR CSHCQQAACG DGSCIRFDQL CNGQIDCQSG EDEDYCRANS FRLTNGSDTS 600
  601 GYLEVLFRSR WEPICADHLN GKISNSICDA MRLGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..103] deduced N/A No confident structure predictions are available.
    2 View Details [104..471] PSI-BLAST 32.221849 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
    3 View Details [472..518] PSI-BLAST 4.69897 Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
    4 View Details [519..635] FFAS03 2.3 No description for 2gtlN was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.286076792172079 bayes_pls_golite062009
  • protein binding
    		•  0.14494900666454 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle