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Protein Overview: vem-1

General Information:
Name(s) found: vem-1 / CE34578 [WormBase]
Description(s) found:
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  • WBGene00006890 locus:vem-1 status:Confirmed UniProt:Q7YZW5 protein_id:CCD62520.1 [WormBase]
  • gi|71993300|ref|NP_001024770.1| VEMA (mammalian ventral midline antigen) related family member (vem-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|32452986|gb|AAP82646.1| Vema (mammalian ventral midline antigen) related protein 1, isoform b, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep111.fasta]
  • Vema (mammalian ventral midline antigen) related protein 1, isoform b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE34578 WBGene00006890 locus:vem-1 status:Confirmed TR:Q7YZW5 protein_id:AAP82646.1 [wormpep150.fasta]
  • 34578 WBGene00006890 locus:vem-1 status:Confirmed TR:Q7YZW5 protein_id:AAP82646.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • locus:vem-1 status:Confirmed TR:Q7YZW5 protein_id:AAP82646.1 [wormpep115.fasta.reversed]
  • CE34578 WBGene00006890 locus:vem-1 status:Confirmed UniProt:Q7YZW5_CAEEL protein_id:AAP82646.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE34578 WBGene00006890 locus:vem-1 status:Confirmed UniProt:Q7YZW5_CAEEL protein_id:AAP82646.1| [wormORF-contam.fasta]
  • VEMA (mammalian ventral midline antigen) related family member (vem-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE34578 WBGene00006890 locus:vem-1 status:Confirmed UniProt:Q7YZW5 protein_id:AAP82646.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE34578 WBGene00006890 locus:vem-1 status:Confirmed UniProt:Q7YZW5 protein_id:CCD62520.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of H2KYD7, VEMA (Mammalian ventral midline antigen) related OS=Caenorhabditis elegans GN=vem-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 183 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: transition metal ion binding [IEALink to PubMed article]
    heme binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSSWFEFT MYDAVFLVVV LGFFFYWLTR SEQPLPAPPK ELAPLPMSDM TVEELRKYDG  60
   61 VKNEHILFGL NGTIYDVTRG KGFYGPGKAY GTLAGHDATR ALGTMDQNAV SSEWDDHTGI 120
  121 SADEQETANE WETQFKFKYL TVGRLVKNSS EKADYGNRKS FVRGAESLDS IINGGDEGTK 180
  181 KDN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] PSI-BLAST 21.522879 Solution structure of a putative steroid-binding protein from Arabidopsis


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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