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View Structure Prediction Details

Protein: vem-1
Organism: Caenorhabditis elegans
Length: 183 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vem-1.

Description E-value Query
Range
Subject
Range
gi|25513778 - gi|25513778|pir||H89582 protein K07E3.6 [imported] - Caenorhabditis elegans
178.0 [0..1] [183..782]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSSWFEFT MYDAVFLVVV LGFFFYWLTR SEQPLPAPPK ELAPLPMSDM TVEELRKYDG  60
   61 VKNEHILFGL NGTIYDVTRG KGFYGPGKAY GTLAGHDATR ALGTMDQNAV SSEWDDHTGI 120
  121 SADEQETANE WETQFKFKYL TVGRLVKNSS EKADYGNRKS FVRGAESLDS IINGGDEGTK 180
  181 KDN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1j03A
Description: Solution structure of a putative steroid-binding protein from Arabidopsis
Matching Structure (courtesy of the PDB):

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Created and Maintained by: Michael Riffle