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Protein Overview: ubc-25

General Information:
Name(s) found: ubc-25 / CE34543 [WormBase]
Description(s) found:
Found 15 descriptions.
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  • WBGene00006720 locus:ubc-25 status:Confirmed UniProt:Q93571 protein_id:CAB02096.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 387 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: morphogenesis of an epithelium [IMPLink to PubMed article]
    protein modification process [IEALink to PubMed article]
    ubiquitin cycle [IEALink to PubMed article]
    Molecular Function: calcium ion binding [IEALink to PubMed article]
    small conjugating protein ligase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACLRKLKED IQVLEKLFPK NHNRFQILSA SVDELSMKFI NAENKGIIVT ANIQENYPRQ  60
   61 PPIWFSESDD VPVIGMSLQR LTETEESTNI LHQVHRLVSD LCSFYNLQMP CELPQIAPPV 120
  121 RDDIDEGRGS DISDTTSEPI DDDMAGDGEV DDDDEEEEDD EDADGDIEIV EMAEEDPTSQ 180
  181 HDVGVSKEGL DMLDKVSKIN RQQHLDGKVQ GSITATDRLM KEIRDIHRSE HFKNGIYTFE 240
  241 LEKEENLYQW WIKLHKVDED SPLFEDMKKL KKDHNQDHLL FSFTFNEKFP CDPPFVRVVA 300
  301 PHINQGFVLG GGAICMELLT KQGWSSAYSI ESCILQIAAT LVKGRARISF DAKHTSTYSM 360
  361 ARAQQSFKSL QQIHAKSGWY TPPKTEG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..210] FFAS03 1.05 The Structure of a Class II ubiquitin-conjugating enzyme, Ubc1.
    2 View Details [211..387] PSI-BLAST 32.39794 Structure of Human Ubiquitin-Conjugating Enzyme (UBCi) Involved in Embryo Attachment and Implantation

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein binding
    		•  0.469169254031451 bayes_pls_golite062009
  • binding
    		•  0.44075344288274 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.35936785933411 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.108796735243525 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle